E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L031361
BDB031361
BDBM627151
CCc1nc2cc(C(=O)NCCCCCNC(=O)C[C@@H]3N=C(c4ccc(Cl)cc4)c4c(sc(C)c4C)-n4c(C)nnc43)ccc2n1-c1ccc2[nH]c(=O)[nH]c2c1
C41H41ClN10O3S
789.366000
YPMJBYZNTYOLPK-YTTGMZPUSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM627151
Local ready
Direct docking supported
E3L031362
BDB031362
BDBM627153
CCc1nc2cc(C(=O)NCCOCCOCCNC(=O)C[C@@H]3N=C(c4ccc(Cl)cc4)c4c(sc(C)c4C)-n4c(C)nnc43)ccc2n1-c1ccc2[nH]c(=O)[nH]c2c1
C42H43ClN10O5S
835.391000
RBFCFVLGGMFHJU-XIFFEERXSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM627153
Local ready
Direct docking supported
E3L031363
BDB031363
BDBM627154
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCOCCOCCNC(=O)c1ccc3c(c1)nc(-c1ccnc4ccccc14)n3-c1ccc3[nH]c(=O)[nH]c3c1)c1nnc(C)n1-2
C49H44ClN11O5S
934.483000
XIZHXRAPFOIFCA-FAIXQHPJSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM627154
Local ready
Direct docking supported
E3L031364
BDB031364
BDBM627155
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCNC(=O)c1cccc3c1CCN3C(=O)Nc1ccc3[nH]c(=O)[nH]c3c1)c1nnc(C)n1-2
C41H41ClN10O4S
805.365000
VMBHLIIQSKNFTN-YTTGMZPUSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM627155
Local ready
Direct docking supported
E3L031365
BDB031365
BDBM627524
CC1(c2ccc(-c3[nH]c4cc(F)cc5c4c3CONC5=O)cc2)CCCN1
C21H20FN3O2
365.408000
FBKICCXLQKLXAZ-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM627524; PubChem:CID155033816
Local ready
Direct docking supported
E3L031366
BDB031366
BDBM628371
CNC(=O)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5ccnn54)c3F)CC2)c(F)n1
C22H21F2N7O2
453.453000
HNMFBUFHSRCKPL-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628371; PubChem:CID169302789
Local ready
Direct docking supported
E3L031367
BDB031367
BDBM628432
CNC(=O)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5ccnn54)c3F)CC2)cn1
C22H22FN7O2
435.463000
GSVIBSIDVASXSN-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628432; PubChem:CID169302774
Local ready
Direct docking supported
E3L031368
BDB031368
BDBM628433
O=C(NC1CC1)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5ccnn54)c3F)CC2)c(F)n1
C24H23F2N7O2
479.491000
TYBZFWDSFYRLGY-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628433; PubChem:CID169302795
Local ready
Direct docking supported
E3L031369
BDB031369
BDBM628434
Cc1cc2c(=O)[nH]c3c(F)c(CN4CCN(c5ccc(C(=O)NC6CC6)nc5F)CC4)ccc3n2n1
C25H25F2N7O2
493.518000
JFHWEAQATAEPIL-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628434; PubChem:CID169302776
Local ready
Direct docking supported
E3L031370
BDB031370
BDBM628436
CNC(=O)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5cc(C)nn54)c3F)CC2)c(F)n1
C23H23F2N7O2
467.480000
FXNJFPDCYISEEA-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628436; PubChem:CID169302751
Local ready
Direct docking supported
E3L031371
BDB031371
US20250215013, Example 44
CNC(=O)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5ccoc54)c3F)CC2)c(F)n1
C23H21F2N5O3
453.449000
IXGZNTGACBFAFA-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628437; PubChem:CID169302803
Local ready
Direct docking supported
E3L031372
BDB031372
BDBM628438
CNC(=O)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)n5cccc45)c3F)CC2)c(F)n1
C23H22F2N6O2
452.465000
QAFJTICJXIEQOV-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628438; PubChem:CID169302759
Local ready
Direct docking supported
E3L031373
BDB031373
BDBM628439
CNC(=O)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5c(Cl)cnn54)c3F)CC2)c(F)n1
C22H20ClF2N7O2
487.898000
AFVMAFOLQJXDAD-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628439; PubChem:CID169302801
Local ready
Direct docking supported
E3L031374
BDB031374
BDBM628440
CNC(=O)c1ccc(N2CCN(Cc3ccc4c5c(c(=O)[nH]c4c3F)CCO5)CC2)c(F)n1
C23H23F2N5O3
455.465000
HREIUYKHSFUJTP-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628440; PubChem:CID169266039
Local ready
Direct docking supported
E3L031375
BDB031375
BDBM628442
CNC(=O)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5cccn54)c3F)CC2)c(F)n1
C23H22F2N6O2
452.465000
SGXQVSMKIFXONE-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628442; PubChem:CID169266060
Local ready
Direct docking supported
E3L031376
BDB031376
BDBM628443
O=C(NCC(F)F)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5ccoc54)c3F)CC2)c(F)n1
C24H21F4N5O3
503.456000
YWIRQHPKTVFUJB-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628443; PubChem:CID169302814
Local ready
Direct docking supported
E3L031377
BDB031377
BDBM628444
O=C(NCC(F)F)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5ccnn54)c3F)CC2)c(F)n1
C23H21F4N7O2
503.460000
VSPZAEQHOWIGKL-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628444; PubChem:CID169302784
Local ready
Direct docking supported
E3L031378
BDB031378
BDBM628445
Cc1cc2c(=O)[nH]c3c(F)c(CN4CCN(c5ccc(C(=O)NCC(F)F)nc5F)CC4)ccc3n2n1
C24H23F4N7O2
517.487000
PXCAJPZVFYBCIX-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628445; PubChem:CID169302761
Local ready
Direct docking supported
E3L031379
BDB031379
BDBM628446
O=C(NC1CC1)c1ccc(N2CCN(Cc3ccc4c([nH]c(=O)c5ccoc54)c3F)CC2)c(F)n1
C25H23F2N5O3
479.487000
BSGQQMGAFBUOQS-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628446; PubChem:CID169302799
Local ready
Direct docking supported
E3L031380
BDB031380
BDBM628447
O=C(NCC(F)F)c1ccc(N2CCN(Cc3ccc4c5c(c(=O)[nH]c4c3F)CCO5)CC2)c(F)n1
C24H23F4N5O3
505.472000
VSEBYLJEXWWUEE-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM628447; PubChem:CID169302747
Local ready
Direct docking supported