E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
Reset
Structure similarity search Input SMILES or upload SDF/MOL/MOL2/PDB/PDBQT; results use Morgan fingerprint Tanimoto.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L033921
BDB033921
 BDBM680986
CCC(=O)N[C@@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@@H](C[C@H]1CC[C@H](CN)CC1)C(=O)N[C@@H](CCCCN(C)C)C(=O)N[C@@H]1CCOc2ccccc21
 C40H56ClN7O5S
782.452000		 XDXITEPTWABADL-HMNCRCSLSA-N Q96GG9 DCN1-like protein 1
BindingDB
BindingDB:BDBM680986
 Local ready
Direct docking supported
E3L033922
BDB033922
 BDBM680987
CCC(=O)N[C@@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@@H](C[C@H]1CC[C@H](CNC(=O)COCCOCCOCCNC(=O)CCCC[C@@H]2SC[C@@H]3NC(=O)N[C@@H]32)CC1)C(=O)N[C@@H](CCCCN(C)C)C(=O)N[C@@H]1CCOc2ccccc21
 C58H85ClN10O11S2
1197.964000		 WUCGQHPXNVJVFU-YCLITIRCSA-N Q96GG9 DCN1-like protein 1
BindingDB
BindingDB:BDBM680987
 Local ready
Direct docking supported
E3L033923
BDB033923
 US12012467, Example 43
CCC(=O)N[C@@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CNCc2ccccc21)C1CCOCC1
 C35H46ClN7O5S
712.317000		 CPGSVFHWIHYGEZ-PJGOFDOSSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680989; PubChem:CID171991111
 Local ready
Direct docking supported
E3L033924
BDB033924
 US12012467, Example 44
CCC(=O)N[C@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CNCc2ccccc21)C1CCOCC1
 C35H46ClN7O5S
712.317000		 CPGSVFHWIHYGEZ-REKFDVGBSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680990; PubChem:CID142442477
 Local ready
Direct docking supported
E3L033925
BDB033925
 US12012467, Example 205
CN(C)CCCC[C@H](NC(=O)[C@@H](NC(=O)[C@@H](N)Cc1nc2ccc(Cl)cc2s1)C1CCCC1)C(=O)N[C@@H]1CCOc2ccccc21
 C34H45ClN6O4S
669.292000		 WLHUZRCLGPCSMG-UUKVNIOTSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680992; PubChem:CID142442715
 Local ready
Direct docking supported
E3L033926
BDB033926
 US12012467, Example 206
CCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CCOc2ccccc21)C1CCOCC1
 C38H52N6O6S
720.937000		 LVCJZGQYNMQDEW-ZBSJVKIDSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680993; PubChem:CID142442440
 Local ready
Direct docking supported
E3L033927
BDB033927
 US12012467, Example 207
CCC(=O)N[C@@H](Cc1nc(C)c(-c2cccc(Cl)c2)s1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CCOc2ccccc21)C1CCOCC1
 C38H49ClN6O6S
753.366000		 YHYPXJCUAJWHRR-JUQCDRLLSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680994; PubChem:CID142442757
 Local ready
Direct docking supported
E3L033928
BDB033928
 US12012467, Example 208
CCC(=O)N[C@@H](Cc1cn2cc(Cl)ccc2n1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CCOc2ccccc21)C1CCOCC1
 C35H46ClN7O6
696.249000		 SVLCFQRLNPHONH-SRGLEEMKSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680995; PubChem:CID171991112
 Local ready
Direct docking supported
E3L033929
BDB033929
 US12012467, Example 209
CNC(=O)N[C@@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CCOc2ccccc21)C1CCOCC1
 C34H44ClN7O6S
714.289000		 CIAYWORYQDGCBB-QUOGVSKYSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680996; PubChem:CID147226339
 Local ready
Direct docking supported
E3L033930
BDB033930
 US12012467, Example 210 & 211
CCC(=O)N[C@@H](Cc1cn2cc(C(C)C)ccc2n1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CCOc2ccccc21)C1CCOCC1
 C38H53N7O6
703.885000		 SMEYAWMIBYCVBY-ZALLFBGUSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680997; PubChem:CID163966443
 Local ready
Direct docking supported
E3L033931
BDB033931
 US12012467, Example 212
CCC(=O)N[C@@H](Cc1cn2cc(Cl)ccc2n1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]1CCOc2ccccc21)C1CCCC1
 C35H46ClN7O5
680.250000		 SBENGNPEZFDTFV-SRGLEEMKSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680998; PubChem:CID171991113
 Local ready
Direct docking supported
E3L033932
BDB033932
 US12012467, Example 213
CCC(=O)N[C@@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@H](CN)[C@@H](C)CC
 C19H27ClN4O2S
410.971000		 PYNGFKGLZXIGAX-TUKIKUTGSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM680999; PubChem:CID148995529
 Local ready
Direct docking supported
E3L033933
BDB033933
 US12012467, Example 214
CCC(=O)N[C@@H](Cc1nc2ccc(C)cc2s1)C(=O)N[C@H](CN)[C@@H](C)CC
 C20H30N4O2S
390.553000		 FNQWIXMGKOMHJI-CWRNSKLLSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681000; PubChem:CID142442597
 Local ready
Direct docking supported
E3L033934
BDB033934
 US12012467, Example 215
CCC(=O)N[C@@H](Cc1nc2ccc(CC)cc2s1)C(=O)N[C@H](CN)[C@@H](C)CC
 C21H32N4O2S
404.580000		 SAXRFWCMSYVRCH-RRQGHBQHSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681001; PubChem:CID142442786
 Local ready
Direct docking supported
E3L033935
BDB033935
 US12012467, Example 216
CCC(=O)N[C@@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@H](CN)C1CCCC1
 C20H27ClN4O2S
422.982000		 OZQLBAAQYIWXSA-JKSUJKDBSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681002; PubChem:CID153472968
 Local ready
Direct docking supported
E3L033936
BDB033936
 US12012467, Example 86
CCC(=O)N[C@@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@H](CN)Cc1ccccc1
 C22H25ClN4O2S
444.988000		 GVLLQABRBKXPOZ-WMZOPIPTSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681003; PubChem:CID153472921
 Local ready
Direct docking supported
E3L033937
BDB033937
 US12012467, Example 87
CCC(=O)N[C@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@H](CN)Cc1ccccc1
 C22H25ClN4O2S
444.988000		 GVLLQABRBKXPOZ-FUHWJXTLSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681004; PubChem:CID147715004
 Local ready
Direct docking supported
E3L033938
BDB033938
 US12012467, Example 88
CCC(=O)N[C@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@@H](CN)Cc1ccccc1
 C22H25ClN4O2S
444.988000		 GVLLQABRBKXPOZ-SJLPKXTDSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681005; PubChem:CID147715005
 Local ready
Direct docking supported
E3L033939
BDB033939
 US12012467, Example 217
CCC(=O)N[C@@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@H](CN)C1CCCCC1
 C21H29ClN4O2S
437.009000		 QMDNLAQAJLSPRZ-DLBZAZTESA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681006; PubChem:CID153472920
 Local ready
Direct docking supported
E3L033940
BDB033940
 US12012467, Example 218
CCC(=O)N[C@@H](Cc1nc2ccc(Cl)cc2s1)C(=O)N[C@H](CN)CC1CCCCC1
 C22H31ClN4O2S
451.036000		 RFUVNMQVYMXTPH-WMZOPIPTSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681007; PubChem:CID153472950
 Local ready
Direct docking supported