E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L034081
BDB034081
US12012467, Example 54
CCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@@H](C)CN
C19H28N4O2S
376.526000
KBKBYGMYMMULQV-WFASDCNBSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681150; PubChem:CID135347877
Local ready
Direct docking supported
E3L034082
BDB034082
US12012467, Example 48
CC[C@H](C)[C@@H](CN)NC(=O)[C@H](Cc1nc2ccc(C(C)C)cc2s1)NC=O
C20H30N4O2S
390.553000
LSSQAPCEJHYVIY-RRQGHBQHSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681151; PubChem:CID135347933
Local ready
Direct docking supported
E3L034083
BDB034083
US12012467, Example 49
CC[C@H](C)[C@@H](CN)NC(=O)[C@@H](N)Cc1nc2ccc(C(C)C)cc2s1
C19H30N4OS
362.543000
UMSTVLDBAJDDFX-DUVNUKRYSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681152; PubChem:CID135347861
Local ready
Direct docking supported
E3L034084
BDB034084
US12012467, Example 50
CC[C@H](C)[C@@H](CN)NC(=O)[C@H](Cc1nc2ccc(C(C)C)cc2s1)NC(=O)C(C)C
C23H36N4O2S
432.634000
JVMBXACGLCDAIX-ZYSHUDEJSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681153; PubChem:CID142442568
Local ready
Direct docking supported
E3L034085
BDB034085
US12012467, Example 51
CCCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@H](CN)[C@@H](C)CC
C23H36N4O2S
432.634000
VPENCKMGYSRPGZ-ZYSHUDEJSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681154; PubChem:CID135348168
Local ready
Direct docking supported
E3L034086
BDB034086
US12012467, Example 52
CC[C@H](C)[C@@H](CN)NC(=O)[C@H](Cc1nc2ccc(C(C)C)cc2s1)NC(=O)NC
C21H33N5O2S
419.595000
UDWIUGFGTQQHHY-RRQGHBQHSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681155; PubChem:CID135348265
Local ready
Direct docking supported
E3L034087
BDB034087
US12012467, Example 125
CCC(=O)N[C@@H](Cc1nc2ccc(C(C)C)cc2s1)C(=O)N[C@H](CNC(=O)C1CCN(C2CCOCC2)CC1)C1CCCCC1
C35H53N5O4S
639.907000
DFKYQPOWOISVFD-XZWHSSHBSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM681156; PubChem:CID171991138
Local ready
Direct docking supported
E3L034088
BDB034088
US20240207267, Example 2
CCO/C=C/c1cc(F)c([C@@H]2CCC(=O)NC2=O)c(F)c1
C15H15F2NO3
295.285000
LGMZBMPWPSWOCK-PORFMDCZSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM682235; PubChem:CID167264505
Local ready
Direct docking supported
E3L034089
BDB034089
US20240207267, Example 5
O=C1CC[C@H](c2c(F)cc(CN3CC[C@@H](C(=O)O)C3)cc2F)C(=O)N1
C17H18F2N2O4
352.337000
SYARSCKFWDLBLM-GHMZBOCLSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM682236; PubChem:CID172055788
Local ready
Direct docking supported
E3L034090
BDB034090
US20240207267, Example 6
O=C1CC[C@@H](c2c(F)cc(CN3CC[C@@H](C(=O)O)C3)cc2F)C(=O)N1
C17H18F2N2O4
352.337000
SYARSCKFWDLBLM-MNOVXSKESA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM682237; PubChem:CID172055789
Local ready
Direct docking supported
E3L034091
BDB034091
US20240207267, Example 7
O=C1CC[C@H](c2c(F)cc(N3CC[C@@H](CO)C3)cc2F)C(=O)N1
C16H18F2N2O3
324.327000
MWJKFQNOTIMGAR-MWLCHTKSSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM682238; PubChem:CID167264507
Local ready
Direct docking supported
E3L034092
BDB034092
US20240207267, Example 9
O=C1CC[C@H](c2c(F)cc(N3CC(CO)C3)cc2F)C(=O)N1
C15H16F2N2O3
310.300000
NNWGGPWDAGWZAT-SNVBAGLBSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM682239; PubChem:CID170185524
Local ready
Direct docking supported
E3L034093
BDB034093
US20240207267, Example 12
O=C1CC[C@H](c2c(F)cc(N3CC[C@@H](C(=O)O)C3)cc2F)C(=O)N1
C16H16F2N2O4
338.310000
GBOBMTABXQTYBE-PSASIEDQSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM682240; PubChem:CID166067665
Local ready
Direct docking supported
E3L034094
BDB034094
US20240207267, Example 13
CCO/C=C/c1cc(F)c([C@H]2CCC(=O)NC2=O)c(F)c1
C15H15F2NO3
295.285000
LGMZBMPWPSWOCK-BRAIEQGRSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM682241; PubChem:CID163739483
Local ready
Direct docking supported
E3L034095
BDB034095
US20240207267, Example 14
CC1(C)CN(c2cc(F)c([C@H]3CCC(=O)NC3=O)c(F)c2)C[C@H]1C(=O)O
C18H20F2N2O4
366.364000
COJWIIXXISPSKO-MNOVXSKESA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM682242; PubChem:CID167264508
Local ready
Direct docking supported
E3L034096
BDB034096
3-(4-(2-Hydroxyethyl)phenyl)piperidine-2,6-dione
O=C1CCC(c2ccc(CCO)cc2)C(=O)N1
C13H15NO3
233.267000
TYKAMJNGHVMWDX-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, PubChem
BindingDB:BDBM682243; PubChem:CID166947772
Local ready
Direct docking supported
E3L034097
BDB034097
BDBM682657
O=C(c1ccc(O[C@H]2CCNC2)c(C2CCCCC2)c1)N1CCC(Oc2cc(F)cc(N3CCNCC3)c2)CC1
C32H43FN4O3
550.719000
KERGUDBBTHPPMM-NDEPHWFRSA-N P12830 Catenin beta-1
BindingDB, PubChem
BindingDB:BDBM682657; PubChem:CID153567988
Local ready
Direct docking supported
E3L034098
BDB034098
BDBM682658
O=C(c1ccc(O[C@H]2CCNC2)c(C2CCCCC2)c1)N1CCC(Oc2cc(F)cc(N3CC4(CCNCC4)C3)c2)CC1
C35H47FN4O3
590.784000
PXIDXDQBKKUSTR-PMERELPUSA-N P12830 Catenin beta-1
BindingDB, PubChem
BindingDB:BDBM682658; PubChem:CID166087230
Local ready
Direct docking supported
E3L034099
BDB034099
BDBM682659
O=C(c1ccc(O[C@H]2CCNC2)c(C2CCCCC2)c1)N1CCC(Oc2cc(F)cc(N3CCC4(CC3)CNC4)c2)CC1
C35H47FN4O3
590.784000
YASVMCFEHWYVPC-PMERELPUSA-N P12830 Catenin beta-1
BindingDB, PubChem
BindingDB:BDBM682659; PubChem:CID166087172
Local ready
Direct docking supported
E3L034100
BDB034100
BDBM682660
O=C(c1ccc(O[C@H]2CCNC2)c(C2CCCCC2)c1)N1CCC(Oc2cc(F)cc(N3C[C@H]4CNC[C@H]4C3)c2)CC1
C34H45FN4O3
576.757000
ZKPQVMMRDYGEDG-MWSYKCOMSA-N P12830 Catenin beta-1
BindingDB, PubChem
BindingDB:BDBM682660; PubChem:CID171346057
Local ready
Direct docking supported