E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L034801
BDB034801
US12110286, Example 37a
C[C@@H]1CN(c2ncc(Cl)c(Nc3ccc4c(c3)n(CCC(C)(C)O)c(=O)n4CCN(C)C)n2)C[C@H](C)C1(F)F
C27H38ClF2N7O2
566.097000
ITBPWDMRSHPPKI-HDICACEKSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699666; PubChem:CID142478679
Local ready
Direct docking supported
E3L034802
BDB034802
US12110286, Example 37b
C[C@@H]1CN(c2ncc(Cl)c(Nc3ccc4c(c3)n(CCC(C)(C)O)c(=O)n4CCN3CCOCC3)n2)C[C@H](C)C1(F)F
C29H40ClF2N7O3
608.134000
KWNVEMCZNGFGEP-BGYRXZFFSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699667; PubChem:CID142478734
Local ready
Direct docking supported
E3L034803
BDB034803
US12110286, Example 38a
CCOC(=O)/C=C/Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4C[C@@H](C)C(F)(F)[C@@H](C)C4)ncc3Cl)ccc21
C29H37ClF2N6O4
607.102000
IOWPNPVEKUMCSF-ZJFJRDRASA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699668; PubChem:CID142478658
Local ready
Direct docking supported
E3L034804
BDB034804
US12110286, Example 39a
Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(OCC(F)(F)F)ncc3Cl)ccc21
C19H21ClF3N5O3
459.856000
VBIBIEBHORWAAJ-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699669; PubChem:CID135386384
Local ready
Direct docking supported
E3L034805
BDB034805
US12110286, Example 40a
C[C@@H]1CN(c2ncc(Cl)c(Nc3ccc4c(c3)n(CCC(C)(C)O)c(=O)n4CCO)n2)C[C@H](C)C1(F)F
C25H33ClF2N6O3
539.027000
CIVIYTCCFBMITO-IYBDPMFKSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699670; PubChem:CID135387062
Local ready
Direct docking supported
E3L034806
BDB034806
US12110286, Example 41a
COC(Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4C[C@@H](C)C(F)(F)[C@@H](C)C4)ncc3Cl)ccc21)OC
C27H37ClF2N6O4
583.080000
DTPORBMDUADVSQ-CALCHBBNSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699671; PubChem:CID135386911
Local ready
Direct docking supported
E3L034807
BDB034807
US12110286, Example 42a
Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4CCC(C#N)CC4)ncc3Cl)ccc21
C23H28ClN7O2
469.977000
UJKQNONXUXPQKZ-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699672; PubChem:CID135386083
Local ready
Direct docking supported
E3L034808
BDB034808
US12110286, Example 42c
Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4CCC(CN5CCOCC5)CC4)ncc3Cl)ccc21
C27H38ClN7O3
544.100000
RGCZXVFDRBQXJU-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699674; PubChem:CID142478667
Local ready
Direct docking supported
E3L034809
BDB034809
US12110286, Example 42d
Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4CCCC(CN5CCOCC5)C4)ncc3Cl)ccc21
C27H38ClN7O3
544.100000
LOBKMHQDXFKHAF-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699675; PubChem:CID142478694
Local ready
Direct docking supported
E3L034810
BDB034810
US12110286, Example 42e
Cn1cc2c(n1)CN(c1ncc(Cl)c(Nc3ccc4c(c3)n(CCC(C)(C)O)c(=O)n4C)n1)CC2
C24H29ClN8O2
497.003000
KGZAHFJYUQKVLV-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699676; PubChem:CID153408820
Local ready
Direct docking supported
E3L034811
BDB034811
US12110286, Example 42f
Cn1ncc2c1CN(c1ncc(Cl)c(Nc3ccc4c(c3)n(CCC(C)(C)O)c(=O)n4C)n1)CC2
C24H29ClN8O2
497.003000
HYRQDNMOGMNWDJ-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699677; PubChem:CID153408819
Local ready
Direct docking supported
E3L034812
BDB034812
US12110286, Example 42h
Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4CCC(N5CCOCC5)CC4)ncc3Cl)ccc21
C26H36ClN7O3
530.073000
MHMMCXLOMNHQEE-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699679; PubChem:CID135386460
Local ready
Direct docking supported
E3L034813
BDB034813
US12110286, Example 42i
Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4CCC(n5cccn5)CC4)ncc3Cl)ccc21
C25H31ClN8O2
511.030000
RWYAKTAVOXCCLP-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699680; PubChem:CID135386873
Local ready
Direct docking supported
E3L034814
BDB034814
US12110286, Example 42j
Cn1c(=O)n(CCC(C)(C)O)c2cc(Nc3nc(N4CCOC(CO)C4)ncc3Cl)ccc21
C22H29ClN6O4
476.965000
SDVICVQVGKUFFN-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM699681; PubChem:CID142478682
Local ready
Direct docking supported
E3L034815
BDB034815
BDBM699777
N#CN1CC[C@H](C(=O)Nc2nc3ccc(C4CC4)cc3s2)C1
C16H16N4OS
312.398000
ZXNLZALQOWYWMY-LBPRGKRZSA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM699777; PubChem:CID167358315
Local ready
Direct docking supported
E3L034816
BDB034816
BDBM699782
Cc1noc(C)c1-c1ccc2nc(NC(=O)[C@H]3CCN(C#N)C3)sc2c1
C18H17N5O2S
367.434000
CATDKEATHRRIOI-ZDUSSCGKSA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM699782; PubChem:CID118981072
Local ready
Direct docking supported
E3L034817
BDB034817
BDBM699785
N#CN1CC[C@H](C(=O)Nc2nc3ccc(Br)nc3s2)C1
C12H10BrN5OS
352.217000
SAIXROXHBRYFLU-ZETCQYMHSA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM699785; PubChem:CID172189635
Local ready
Direct docking supported
E3L034818
BDB034818
BDBM699789
Cc1noc(C)c1-c1ccc2nc(NC(=O)[C@H]3CCN(C#N)C3)sc2n1
C17H16N6O2S
368.422000
FHTUUQLCZRZHDL-NSHDSACASA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM699789; PubChem:CID118980527
Local ready
Direct docking supported
E3L034819
BDB034819
BDBM699790
N#CN1CC[C@H](NC(=O)c2nc3ccccc3s2)C1
C13H12N4OS
272.333000
VBPWBOZBOAVJSZ-VIFPVBQESA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM699790; PubChem:CID170709730
Local ready
Direct docking supported
E3L034820
BDB034820
BDBM699794
Cc1noc(C)c1-c1ccc2nc(NC(=O)[C@@H]3CCN(C#N)C3)sc2c1
C18H17N5O2S
367.434000
CATDKEATHRRIOI-CYBMUJFWSA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM699794; PubChem:CID172675536
Local ready
Direct docking supported