E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L041361
BDB041361
BDBM773604
[2H]C([2H])([2H])NC(=O)c1ccc(N2CCN(C([2H])([2H])c3ccc4c(c3F)CC(=O)c3cccnc3-4)CC2)c(F)n1
C25H23F2N5O2
468.518509
IPZGKRXJOYMDKP-BNZCHREDSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM773604; PubChem:CID177859247
Local ready
Direct docking supported
E3L041362
BDB041362
BDBM773605
[2H]C([2H])([2H])NC(=O)c1ccc(N2CCN(C([2H])([2H])c3ccc4c(c3F)CC(=O)c3cc(F)cnc3-4)CC2)c(F)n1
C25H22F3N5O2
486.508509
VTFPXKYQAFPTQF-HGSMBRELSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM773605; PubChem:CID177859248
Local ready
Direct docking supported
E3L041363
BDB041363
US20250296939, Example 1
CC[C@@H]1CN(Cc2cc([C@H](CC(=O)O)c3ccc4c(nnn4C)c3C)cc3ccsc23)Cc2nc(O)ccc2O1
C30H31N5O4S
557.676000
XVUYBPCBXQMZGQ-GGAORHGYSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773610; PubChem:CID169261423
Local ready
Direct docking supported
E3L041364
BDB041364
US20250296939, Example 2
CC[C@@H]1CN(Cc2cc([C@@H](CC(=O)O)c3ccc4c(nnn4C)c3C)cc3ccsc23)Cc2nc(O)ccc2O1
C30H31N5O4S
557.676000
XVUYBPCBXQMZGQ-FYYLOGMGSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773611; PubChem:CID169261306
Local ready
Direct docking supported
E3L041365
BDB041365
US20250296939, Example 3
Cc1c([C@@H](CC(=O)O)c2cc(CN3Cc4nc(O)ccc4OC4(CC4)C3)c3sccc3c2)ccc2c1nnn2C
C30H29N5O4S
555.660000
BAAVRKYTPZHRHG-QFIPXVFZSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773612; PubChem:CID169261292
Local ready
Direct docking supported
E3L041366
BDB041366
US20250296939, Example 4
Cc1c([C@H](CC(=O)O)c2cc(CN3Cc4nc(O)ccc4OC4(CC4)C3)c3sccc3c2)ccc2c1nnn2C
C30H29N5O4S
555.660000
BAAVRKYTPZHRHG-JOCHJYFZSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773613; PubChem:CID169261381
Local ready
Direct docking supported
E3L041367
BDB041367
US20250296939, Example 5
Cc1c([C@H](CC(=O)O)c2cc(CN3Cc4nc(O)ccc4O[C@H](C4CC4)C3)c3sccc3c2)ccc2c1nnn2C
C31H31N5O4S
569.687000
XRCUCRBYTXNHPV-KCWPFWIISA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773614; PubChem:CID169261289
Local ready
Direct docking supported
E3L041368
BDB041368
US20250296939, Example 6
Cc1c([C@@H](CC(=O)O)c2cc(CN3Cc4nc(O)ccc4O[C@H](C4CC4)C3)c3sccc3c2)ccc2c1nnn2C
C31H31N5O4S
569.687000
XRCUCRBYTXNHPV-HOFKKMOUSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773615; PubChem:CID169261312
Local ready
Direct docking supported
E3L041369
BDB041369
US20250296939, Example 7
Cc1c([C@@H](CC(=O)O)c2cc(CN3Cc4nc(O)ccc4O[C@@H](C4CC4)C3)c3sccc3c2)ccc2c1nnn2C
C31H31N5O4S
569.687000
XRCUCRBYTXNHPV-WNCULLNHSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773616; PubChem:CID169261222
Local ready
Direct docking supported
E3L041370
BDB041370
US20250296939, Example 8
Cc1c([C@H](CC(=O)O)c2cc(CN3Cc4nc(O)ccc4O[C@@H](C4CC4)C3)c3sccc3c2)ccc2c1nnn2C
C31H31N5O4S
569.687000
XRCUCRBYTXNHPV-YIXXDRMTSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773617; PubChem:CID169261379
Local ready
Direct docking supported
E3L041371
BDB041371
US20250296939, Example 9
Cc1c([C@@H](CC(=O)O)c2cc(CN3Cc4nc(O)ccc4O[C@H](C4CC4)C3)c3sccc3c2)cnc2c1nnn2C
C30H30N6O4S
570.675000
ULHGZNJXWIHYAN-OFVILXPXSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773618; PubChem:CID169261382
Local ready
Direct docking supported
E3L041372
BDB041372
US20250296939, Example 10
Cc1c([C@H](CC(=O)O)c2cc(CN3Cc4nc(O)ccc4O[C@H](C4CC4)C3)c3sccc3c2)cnc2c1nnn2C
C30H30N6O4S
570.675000
ULHGZNJXWIHYAN-BWKNWUBXSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773619; PubChem:CID169261218
Local ready
Direct docking supported
E3L041373
BDB041373
US20250296939, Example 11
CC[C@@H]1CN(Cc2cc([C@@H](c3ccc4c(nnn4C)c3C)C(C)(C)C(=O)O)cc3ccsc23)Cc2nc(O)ccc2O1
C32H35N5O4S
585.730000
KVFASVFLKMEYNA-DFHRPNOPSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773620; PubChem:CID169261328
Local ready
Direct docking supported
E3L041374
BDB041374
US20250296939, Example 12
CC[C@@H]1CN(Cc2cc([C@H](c3ccc4c(nnn4C)c3C)C(C)(C)C(=O)O)cc3ccsc23)Cc2nc(O)ccc2O1
C32H35N5O4S
585.730000
KVFASVFLKMEYNA-SKCUWOTOSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773621; PubChem:CID169261434
Local ready
Direct docking supported
E3L041375
BDB041375
US20250296939, Example 13
Cc1c([C@H](c2cc(CN3Cc4nc(O)ccc4OC4(CC4)C3)c3sccc3c2)C(C)(C)C(=O)O)ccc2c1nnn2C
C32H33N5O4S
583.714000
KRJXCYSLRFJRTR-MHZLTWQESA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773622; PubChem:CID169261527
Local ready
Direct docking supported
E3L041376
BDB041376
US20250296939, Example 14
Cc1c([C@H](c2cc(CN3Cc4nc(O)ccc4O[C@H](C4CC4)C3)c3sccc3c2)C(C)(C)C(=O)O)ccc2c1nnn2C
C33H35N5O4S
597.741000
NQHJDVMIQCKONE-YTMVLYRLSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773623; PubChem:CID169261558
Local ready
Direct docking supported
E3L041377
BDB041377
US20250296939, Example 15
Cc1c([C@@H](CC(=O)O)c2cc(CN3Cc4nc(O)ccc4O[C@H](C)C3)c3sccc3c2)ccc2c1NNN2C
C29H31N5O4S
545.665000
GVCMEQCYVNGWJV-ZHRRBRCNSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773624; PubChem:CID177273834
Local ready
Direct docking supported
E3L041378
BDB041378
US20250296939, Example 16
Cc1c([C@H](CC(=O)O)c2cc(N3CCOc4ccc(O)nc4C3)c3sccc3c2)ccc2c1nnn2C
C27H25N5O4S
515.595000
LKJMALHAACHMPN-LJQANCHMSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773625; PubChem:CID177859252
Local ready
Direct docking supported
E3L041379
BDB041379
US20250296939, Example 17
CC[C@H]1Cc2ccc(O)nc2CN(Cc2cc([C@H](CC(=O)O)c3cc(C)c4c(nnn4C)c3C)cc3ccsc23)C1
C32H35N5O3S
569.731000
DJBZBARHSAYBAA-FNZWTVRRSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773626; PubChem:CID169261263
Local ready
Direct docking supported
E3L041380
BDB041380
US20250296939, Example 18
CC[C@@H]1CN(Cc2cc([C@@H](CC(=O)O)c3cc(C)c4c(nnn4C)c3C)cc3ccsc23)Cc2nc(O)ccc2O1
C31H33N5O4S
571.703000
RREIVZGCMJJJIT-ISKFKSNPSA-N Q14145 NAD(P)H dehydrogenase [quinone] 1
BindingDB, PubChem
BindingDB:BDBM773627; PubChem:CID169261509
Local ready
Direct docking supported