E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L043561
BDB043561
BDBM50008814
CC(C)(C)S(=O)(=O)C[C@H](C1CC1)N1C(=O)[C@@](C)(Cc2ncc(C(F)(F)C(=O)O)s2)C[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)c(F)c1
C33H35Cl2F3N2O5S2
731.686000
YMBUZVVHJGRMEZ-AJRUUFPASA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50008814
Local ready
Direct docking supported
E3L043562
BDB043562
BDBM50008815
CC(C)(C)S(=O)(=O)C[C@H](C1CC1)N1C(=O)[C@@](C)(Cc2ncc(CC(=O)O)o2)C[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)c(F)c1
C33H37Cl2FN2O6S
679.638000
DXESSOIHKFKNRW-CWIPYCOQSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50008815
Local ready
Direct docking supported
E3L043563
BDB043563
BDBM50008816
CC(C)(C)S(=O)(=O)C[C@H](C1CC1)N1C(=O)[C@@](C)(Cc2nnc(CC(=O)O)[nH]2)C[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)cc1
C32H38Cl2N4O5S
661.652000
SWESMVFNRHMZQJ-KKRKAPGZSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50008816
Local ready
Direct docking supported
E3L043564
BDB043564
BDBM50008817
CC(C)(C)S(=O)(=O)C[C@H](C1CC1)N1C(=O)[C@@](C)(Cc2ncc(CC(=O)O)[nH]2)C[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)cc1
C33H39Cl2N3O5S
660.664000
MKYSYCAAQKPTKT-HEBVPBOISA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50008817
Local ready
Direct docking supported
E3L043565
BDB043565
BDBM50008818
CC(C)(C)S(=O)(=O)C[C@H](C1CC1)N1C(=O)[C@@](C)(Cc2ccc(C(=O)O)cn2)O[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)cc1
C33H36Cl2N2O6S
659.632000
OTQRFDJHHZHHNT-OZLMZZSTSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50008818
Local ready
Direct docking supported
E3L043566
BDB043566
BDBM50008819
CC(C)(C)S(=O)(=O)C[C@H](C1CC1)N1C(=O)[C@](C)(Cc2ccc(C(=O)O)cn2)O[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)cc1
C33H36Cl2N2O6S
659.632000
OTQRFDJHHZHHNT-LNHQPZRBSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50008819
Local ready
Direct docking supported
E3L043567
BDB043567
BDBM50008820
CC(C)(C)S(=O)(=O)C[C@H](C1CC1)N1C(=O)[C@](C)(Cc2ccc(C(=O)O)cn2)C[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)cc1
C34H38Cl2N2O5S
657.660000
PNBIDSMJDDJULQ-XWJIURCXSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50008820
Local ready
Direct docking supported
E3L043568
BDB043568
BDBM50008821
CC[C@@H](CS(=O)(=O)C(C)(C)C)N1C(=O)[C@H](CC(=O)O)O[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)cc1
C26H31Cl2NO6S
556.508000
UQONPZNBMIQADI-NEUULRRLSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50008821; PubChem:CID73386679
Local ready
Direct docking supported
E3L043569
BDB043569
Camptothecin
CC[C@@]1(O)C(=O)OCc2c1cc1n(c2=O)Cc2cc3ccccc3nc2-1
C20H16N2O4
348.358000
VSJKWCGYPAHWDS-FQEVSTJZSA-N Q9HCI5 Melanoma-associated antigen E1
BindingDB, PubChem
BindingDB:BDBM50008923; PubChem:CID24360
Local ready
Direct docking supported
E3L043570
BDB043570
Zafirlukast
COc1cc(C(=O)NS(=O)(=O)c2ccccc2C)ccc1Cc1cn(C)c2ccc(NC(=O)OC3CCCC3)cc12
C31H33N3O6S
575.687000
YEEZWCHGZNKEEK-UHFFFAOYSA-N P37231, Q14145 Kelch-like ECH-associated protein 1, Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50009073; PubChem:CID5717
Local ready
Direct docking supported
E3L043571
BDB043571
Ac-Phe-Ala-Leu-Lys(Me3)-Ser-NH2
CC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCC[N+](C)(C)C)C(=O)N[C@@H](CO)C(N)=O
C32H54N7O7+
648.826000
PWTPHMJTGGEKCZ-SJSXQSQASA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB, PubChem
BindingDB:BDBM50009454; PubChem:CID90655573
Local ready
Direct docking supported
E3L043572
BDB043572
BDBM50009555
COC(=O)c1ccc(C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CCCC[N+](C)(C)C)C(=O)NC(CO)CO)C2CCCC2)cc1
C40H59N6O9+
767.945000
RVSBUVWESBGOMR-OPPLUPLLSA-O O00257 E3 SUMO-protein ligase CBX4
BindingDB
BindingDB:BDBM50009555
Local ready
Direct docking supported
E3L043573
BDB043573
BDBM50009619
CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]1CCC(=O)NCCCC(=O)[C@H](O)[C@H](CC2CCCCC2)NC1=O
C32H48N4O7
600.757000
DYNAXOPFOQSIRV-HQQJGFCBSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM50009619; PubChem:CID15689671
Local ready
Direct docking supported
E3L043574
BDB043574
BDBM50009620
CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]1CCC(=O)NCCOC(=O)[C@H](O)[C@H](CC2CCCCC2)NC1=O
C31H46N4O8
602.729000
OGYDAEJIGCMSTF-JAYJDBRPSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM50009620; PubChem:CID15689668
Local ready
Direct docking supported
E3L043575
BDB043575
BDBM50009621
CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]1CCC(=O)NCCC[C@H](O)[C@H](O)[C@H](CC2CCCCC2)NC1=O
C32H50N4O7
602.773000
IXGDPPFLARWURZ-LFGITCQGSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM50009621; PubChem:CID15689673
Local ready
Direct docking supported
E3L043576
BDB043576
BDBM50009622
CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]1CNC(=O)CCCOC(=O)[C@H](O)[C@H](CC2CCCCC2)NC1=O
C31H46N4O8
602.729000
KEHJFSADHYLALA-JAYJDBRPSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM50009622; PubChem:CID15689669
Local ready
Direct docking supported
E3L043577
BDB043577
BDBM50009623
CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]1CCC(=O)NCCCC2(OCCO2)[C@H](O)[C@H](CC2CCCCC2)NC1=O
C34H52N4O8
644.810000
WZKOVMBSHSOODL-PFWSVGDOSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM50009623; PubChem:CID15689672
Local ready
Direct docking supported
E3L043578
BDB043578
BDBM50009624
CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]1CCC(=O)NCCC[C@@H](O)[C@H](O)[C@H](CC2CCCCC2)NC1=O
C32H50N4O7
602.773000
IXGDPPFLARWURZ-YYDZWWTMSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM50009624; PubChem:CID15689674
Local ready
Direct docking supported
E3L043579
BDB043579
Adenosylhomocysteine
Nc1ncnc2c1ncn2[C@@H]1O[C@H](CSCC[C@H](N)C(=O)O)[C@@H](O)[C@H]1O
C14H20N6O5S
384.418000
ZJUKTBDSGOFHSH-WFMPWKQPSA-N O96028, Q03164, Q9BQA1 Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase 2A, Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50009672; PubChem:CID439155
Local ready
Direct docking supported
E3L043580
BDB043580
L-158809
CCc1nc2c(C)cc(C)nc2n1Cc1ccc(-c2ccccc2-c2nnn[nH]2)cc1
C24H23N7
409.497000
YFWXFHNZGKNDBC-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50009718; PubChem:CID183134
Local ready
Direct docking supported