E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L063521
BDB063521
PROTAC I-d
CC1(C)CC[C@]2(C(=O)NCCCCCNc3cccc4c3C(=O)N(C3CCC(=O)NC3=O)C4=O)CC[C@]3(C)[C@H](C(=O)C=C4[C@@]5(C)C=C(C#N)C(=O)C(C)(C)[C@@H]5CC[C@]43C)[C@@H]2C1
C49H61N5O7
832.055000
NOJJELRNFCQZQC-ZGUQAFIRSA-N Q14145 Kelch-like ECH-associated protein 1
BindingDB, PubChem
BindingDB:BDBM50620488; PubChem:CID171378587
Local ready
Direct docking supported
E3L063522
BDB063522
BDBM50621119
CO[C@@H]1[C@@H](n2cc(-c3cc(F)c(Br)c(F)c3)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1ccc2ncsc2c1
C24H22BrF2N5O5S
610.437000
ZQSAQSCGHSOXTE-SUHOFRIBSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50621119; PubChem:CID164767552
Local ready
Direct docking supported
E3L063523
BDB063523
BDBM50621121
CCN(C(=O)[C@@H]1O[C@H](CO)[C@H](O)[C@H](n2cc(-c3cc(F)c(Cl)c(F)c3)nn2)[C@H]1OC)c1ccc2ncsc2c1
C25H24ClF2N5O5S
580.013000
HZLZEEYJSMJHJF-VLZGJKPMSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50621121; PubChem:CID164767590
Local ready
Direct docking supported
E3L063524
BDB063524
WS-383 (free base)
Cc1cc(Sc2nnnn2CCN(C)C)n2nc(SCc3ccc(Cl)cc3)nc2n1
C18H20ClN9S2
462.008000
MGESDQAAIJOGJA-UHFFFAOYSA-N Q96GG9 DCN1-like protein 1
BindingDB, PubChem
BindingDB:BDBM50621125; PubChem:CID138319704
Local ready
Direct docking supported
E3L063525
BDB063525
BDBM50621188
CC(NC(=O)CNCc1ccccc1)C(=O)NC(Cc1ccccc1)C(=O)O
C21H25N3O4
383.448000
DQPOBPRAMICVLU-UHFFFAOYSA-N Q8IVV7 Glucose-induced degradation protein 4 homolog
BindingDB, PubChem
BindingDB:BDBM50621188; PubChem:CID172463034
Local ready
Direct docking supported
E3L063526
BDB063526
N-benzyl-2-(benzylamino)acetamide
O=C(CNCc1ccccc1)NCc1ccccc1
C16H18N2O
254.333000
WHPBAOBBWAFHRE-UHFFFAOYSA-N Q8IVV7 Glucose-induced degradation protein 4 homolog
BindingDB, PubChem
BindingDB:BDBM50621189; PubChem:CID408045
Local ready
Direct docking supported
E3L063527
BDB063527
N,N~2~-bis[(4-methoxyphenyl)methyl]glycinamide
COc1ccc(CNCC(=O)NCc2ccc(OC)cc2)cc1
C18H22N2O3
314.385000
RXVZBFSJKBZCTM-UHFFFAOYSA-N Q8IVV7 Glucose-induced degradation protein 4 homolog
BindingDB, PubChem
BindingDB:BDBM50621190; PubChem:CID10946965
Local ready
Direct docking supported
E3L063528
BDB063528
BDBM50621191
O=C(CNCc1ccc(OCc2cccc(Cl)c2)cc1)NCc1ccccc1
C23H23ClN2O2
394.902000
IEDFCNZXCUMEMQ-UHFFFAOYSA-N Q8IVV7 Glucose-induced degradation protein 4 homolog
BindingDB, PubChem
BindingDB:BDBM50621191; PubChem:CID172465746
Local ready
Direct docking supported
E3L063529
BDB063529
BDBM50621192
Cc1ccccc1Cc1ccc(CNC(=O)[C@@H]2CCCN2)c(F)c1
C20H23FN2O
326.415000
KOEZDOWMOKWWCW-IBGZPJMESA-N Q8IVV7 Glucose-induced degradation protein 4 homolog
BindingDB, PubChem
BindingDB:BDBM50621192; PubChem:CID172452168
Local ready
Direct docking supported
E3L063530
BDB063530
BDBM50621193
O=C(CNCc1ccccc1)N[C@H]1CC[C@@H](c2nc3ccccc3[nH]2)CC1
C22H26N4O
362.477000
NJJOKGWFZQVSMR-HDICACEKSA-N Q8IVV7 Glucose-induced degradation protein 4 homolog
BindingDB
BindingDB:BDBM50621193
Local ready
Direct docking supported
E3L063531
BDB063531
BDBM50621194
COc1ccc(CNCC(=O)N[C@H]2CC[C@@H](c3nc4cc(OCCOCCOCCOCCN)ccc4[nH]3)CC2)cc1
C31H45N5O6
583.730000
LEQTXZGSORDUSS-PLQXJYEYSA-N Q8IVV7 Glucose-induced degradation protein 4 homolog
BindingDB
BindingDB:BDBM50621194
Local ready
Direct docking supported
E3L063532
BDB063532
(3-(1-Aminoisoquinolin-6-yl)phenyl)boronic acid
Nc1nccc2cc(-c3cccc(B(O)O)c3)ccc12
C15H13BN2O2
264.093000
CCUGLTODPQTEBR-UHFFFAOYSA-N P00748 Coagulation factor XII
BindingDB, PubChem
BindingDB:BDBM50621294; PubChem:CID137349137
Local ready
Direct docking supported
E3L063533
BDB063533
BDBM50621295
CC1(C)OB(C(N)c2cccc(Cl)c2)OC1(C)C
C13H19BClNO2
267.565000
SYLJDSUSDMSOKV-UHFFFAOYSA-N P00748 Coagulation factor XII
BindingDB, PubChem
BindingDB:BDBM50621295; PubChem:CID133682733
Local ready
Direct docking supported
E3L063534
BDB063534
BDBM50621296
CC1(C)OB(C(NC(=O)c2cnn(Cc3ccccc3)c2)c2cccc(Cl)c2)OC1(C)C
C24H27BClN3O3
451.763000
VRPVNXMPAVISSZ-UHFFFAOYSA-N P00748 Coagulation factor XII
BindingDB, PubChem
BindingDB:BDBM50621296; PubChem:CID172440400
Local ready
Direct docking supported
E3L063535
BDB063535
BDBM50621297
Cc1ccc(C(NC(=O)c2cnn(Cc3ccccc3)c2)B2OC(C)(C)C(C)(C)O2)c(F)c1
C25H29BFN3O3
449.335000
FOOYQBFAGIVGFV-UHFFFAOYSA-N P00748 Coagulation factor XII
BindingDB, PubChem
BindingDB:BDBM50621297; PubChem:CID172463994
Local ready
Direct docking supported
E3L063536
BDB063536
BDBM50621298
O=C(NC(B(O)O)c1cccc(Cl)c1)c1cnn(Cc2ccccc2)c1
C18H17BClN3O3
369.617000
ZXWADSDWEAQLAR-UHFFFAOYSA-N P00748 Coagulation factor XII
BindingDB, PubChem
BindingDB:BDBM50621298; PubChem:CID172453366
Local ready
Direct docking supported
E3L063537
BDB063537
PROTAC NSD3 degrader-1
Cc1cc(CNCCCCCCCCCCC(=O)N[C@H](C(=O)N2C[C@H](O)C[C@H]2C(=O)N[C@@H](C)c2ccc(-c3scnc3C)cc2)C(C)(C)C)cc(C)c1-c1ncn(C)c1-c1ccnc2cc(F)ccc12
C56H71FN8O4S
971.301000
BOTJARXURVIORK-NOXIQMFQSA-N Q9BZ95 Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50621394; PubChem:CID168510425
Local ready
Direct docking supported
E3L063538
BDB063538
Dihydrouracil
O=C1CCNC(=O)N1
C4H6N2O2
114.104000
OIVLITBTBDPEFK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM50621579; PubChem:CID649
Local ready
Direct docking supported
E3L063539
BDB063539
2-Azetidinone
O=C1CCN1
C3H5NO
71.079000
MNFORVFSTILPAW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM50621580; PubChem:CID136721
Local ready
Direct docking supported
E3L063540
BDB063540
Acetylurea
CC(=O)NC(N)=O
C3H6N2O2
102.093000
GKRZNOGGALENQJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM50621581; PubChem:CID68956
Local ready
Direct docking supported