E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L064701
BDB064701
Nsd3-IN-3
CCOc1ccc(OCCn2c(S)nc3c(N)ncnc32)cc1
C15H17N5O2S
331.401000
CPVQNKHOVSEOTA-UHFFFAOYSA-N Q9BZ95 Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637595; PubChem:CID805136
Local ready
Direct docking supported
E3L064702
BDB064702
6-Amino-9-[2-(4-fluorophenoxy)ethyl]-9H-purine
Nc1ncnc2c1ncn2CCOc1ccc(F)cc1
C13H12FN5O
273.271000
LNHTTZWPBXACSA-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD3, Histone-lysine N-methyltransferase NSD2
BindingDB, PubChem
BindingDB:BDBM50637596; PubChem:CID85989513
Local ready
Direct docking supported
E3L064703
BDB064703
9-[2-(4-chlorophenoxy)ethyl]-9H-purin-6-ylamine
Nc1ncnc2c1ncn2CCOc1ccc(Cl)cc1
C13H12ClN5O
289.726000
NECCVFMLXAOCSZ-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637597; PubChem:CID30470502
Local ready
Direct docking supported
E3L064704
BDB064704
Nsd-IN-3
Nc1ncnc2c1ncn2CCOc1ccc(Br)cc1
C13H12BrN5O
334.177000
KEUZGQNTDMYNJZ-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637598; PubChem:CID61675786
Local ready
Direct docking supported
E3L064705
BDB064705
9-[2-(4-Iodophenoxy)ethyl]purin-6-amine
Nc1ncnc2c1ncn2CCOc1ccc(I)cc1
C13H12IN5O
381.177000
JIBUXWLGVKLYOX-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD3, Histone-lysine N-methyltransferase NSD2
BindingDB, PubChem
BindingDB:BDBM50637599; PubChem:CID85989527
Local ready
Direct docking supported
E3L064706
BDB064706
9-[2-[4-(Trifluoromethyl)phenoxy]ethyl]purin-6-amine
Nc1ncnc2c1ncn2CCOc1ccc(C(F)(F)F)cc1
C14H12F3N5O
323.278000
LMIWLTNQTQCAFF-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637600; PubChem:CID163198856
Local ready
Direct docking supported
E3L064707
BDB064707
9-[2-(4-methoxyphenoxy)ethyl]-9H-purin-6-ylamine
COc1ccc(OCCn2cnc3c(N)ncnc32)cc1
C14H15N5O2
285.307000
YSVQBYRFAUILJW-UHFFFAOYSA-N Q9BZ95 Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637601; PubChem:CID43829133
Local ready
Direct docking supported
E3L064708
BDB064708
4-[2-(6-Aminopurin-9-yl)ethoxy]benzonitrile
N#Cc1ccc(OCCn2cnc3c(N)ncnc32)cc1
C14H12N6O
280.291000
ZNRRBKKNBIYMJF-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637602; PubChem:CID61675704
Local ready
Direct docking supported
E3L064709
BDB064709
9-[2-(3-Chlorophenoxy)ethyl]purin-6-amine
Nc1ncnc2c1ncn2CCOc1cccc(Cl)c1
C13H12ClN5O
289.726000
OABYACGENXYGQN-UHFFFAOYSA-N Q9BZ95 Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637603; PubChem:CID85989519
Local ready
Direct docking supported
E3L064710
BDB064710
4-[2-(6-Aminopurin-9-yl)ethoxy]-2-chlorobenzonitrile
N#Cc1ccc(OCCn2cnc3c(N)ncnc32)cc1Cl
C14H11ClN6O
314.736000
DNPCMHFWLKAUJY-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637604; PubChem:CID170551573
Local ready
Direct docking supported
E3L064711
BDB064711
BDBM50637605
N#Cc1ccc(OCCn2cnc3c(N)ncnc32)cc1C#N
C15H11N7O
305.301000
VCTOVJHRLMDIGQ-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637605; PubChem:CID170551580
Local ready
Direct docking supported
E3L064712
BDB064712
9-[2-(2-Chloro-4-methylphenoxy)ethyl]purin-6-amine
Cc1ccc(OCCn2cnc3c(N)ncnc32)c(Cl)c1
C14H14ClN5O
303.753000
LYYVRAKDYAJHHL-UHFFFAOYSA-N Q9BZ95 Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637606; PubChem:CID85989402
Local ready
Direct docking supported
E3L064713
BDB064713
9-[2-(4-Bromo-2-fluorophenoxy)ethyl]purin-6-amine
Nc1ncnc2c1ncn2CCOc1ccc(Br)cc1F
C13H11BrFN5O
352.167000
VRIVDDNJQWMIRP-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD2, Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637607; PubChem:CID170551584
Local ready
Direct docking supported
E3L064714
BDB064714
9-[2-(4-Bromo-3-fluorophenoxy)ethyl]purin-6-amine
Nc1ncnc2c1ncn2CCOc1ccc(Br)c(F)c1
C13H11BrFN5O
352.167000
JKYDSBGVHKVKLG-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD3, Histone-lysine N-methyltransferase NSD2
BindingDB, PubChem
BindingDB:BDBM50637608; PubChem:CID170551572
Local ready
Direct docking supported
E3L064715
BDB064715
5-[2-(6-Aminopurin-9-yl)ethoxy]pyridine-2-carbonitrile
N#Cc1ccc(OCCn2cnc3c(N)ncnc32)cn1
C13H11N7O
281.279000
BZWSHAQVPTYVSN-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD3, Histone-lysine N-methyltransferase NSD2
BindingDB, PubChem
BindingDB:BDBM50637609; PubChem:CID170551583
Local ready
Direct docking supported
E3L064716
BDB064716
BDBM50637610
N#Cc1ccc(OCCn2c(S)nc3c(N)ncnc32)cc1
C14H12N6OS
312.358000
IOZHABSMAWQUDF-UHFFFAOYSA-N Q9BZ95 Histone-lysine N-methyltransferase NSD3
BindingDB, PubChem
BindingDB:BDBM50637610; PubChem:CID170551571
Local ready
Direct docking supported
E3L064717
BDB064717
4-[2-(6-amino-8-oxo-7H-purin-9-yl)ethoxy]benzonitrile
N#Cc1ccc(OCCn2c(O)nc3c(N)ncnc32)cc1
C14H12N6O2
296.290000
GMPZSQLBUVZIEX-UHFFFAOYSA-N O96028, Q9BZ95 Histone-lysine N-methyltransferase NSD3, Histone-lysine N-methyltransferase NSD2
BindingDB, PubChem
BindingDB:BDBM50637611; PubChem:CID170551578
Local ready
Direct docking supported
E3L064718
BDB064718
BDBM50637898
COc1cc2c(cc1OC(C)C)[C@H](c1ccc(Cl)cc1)N(c1ccc(N(C)C[C@H]3CC[C@H](N4CCN(C)C(=O)C4)CC3)cc1)C(=O)C2
C38H47ClN4O4
659.271000
CLRSLRWKONPSRQ-IIPSPAQQSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM50637898
Local ready
Direct docking supported
E3L064719
BDB064719
BDBM50637899
O=C1CN(C(=O)N2C(c3ccc4c(c3)C(=O)NCC(=O)N4c3ccccc3)=N[C@@H](c3ccc(Cl)cc3)[C@H]2c2ccc(Cl)cc2)CCN1
C35H28Cl2N6O4
667.553000
FWVQSVLYFOJBHQ-AJQTZOPKSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM50637899; PubChem:CID172443161
Local ready
Direct docking supported
E3L064720
BDB064720
BDBM50638265
COc1cc(-c2nc3c(C(N)=O)cccc3[nH]2)cc(Br)c1OC(=O)C(C)(C)C
C20H20BrN3O4
446.301000
MXAQFFKLNMZRSV-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM50638265; PubChem:CID175450857
Local ready
Direct docking supported