E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L066380
LIG000950
31
COc1cc2ccc(CNc3ccc4c(c3)CN(C3CCC(=O)NC3=O)C4=O)cc2cc1OC
C26H25N3O5
459.502000
MNFHBIPAWRKQNZ-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB625
Local ready
Direct docking supported
E3L066381
LIG000951
LIG000951
CC(=O)N[C@H](C(=O)N1C[C@H](O)[C@H](F)[C@H]1C(=O)NCc1ccc(-c2scnc2C)cc1)C(C)(C)C
C24H31FN4O4S
490.601000
MNNVXLLCYGGFOQ-VNYTWHDVSA-N P40337, Q15369 Elongin-C
BindingDB, e3_ligand
BindingDB:BDBM50628930; e3_ligand:16
Local ready
Direct docking supported
E3L066382
LIG000952
LIG000952
CC(=O)N[C@H](C(=O)N1C[C@H](O)[C@@H](F)[C@H]1C(=O)NCc1ccc(-c2scnc2C)cc1)C(C)(C)C
C24H31FN4O4S
490.601000
MNNVXLLCYGGFOQ-YOUFYPILSA-N P40337 -
e3_ligand
e3_ligand:5
Local ready
Direct docking supported
E3L066383
LIG000953
19
COc1cccc(C(=O)Nc2ccc3c(c2)CN(C2CCC(=O)NC2=O)C3=O)c1
C21H19N3O5
393.399000
MNOPHTXOYIDKKA-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB633
Local ready
Direct docking supported
E3L066384
LIG000954
27c
CC1CN(c2ncc(Cl)c(Nc3ccc4c(c3)n(CCC(C)(C)O)c(=O)n4C)n2)CCC1(F)F
C23H29ClF2N6O2
494.974000
MOBUBSZJEOKULO-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, MolGlueDB
BindingDB:BDBM50511628; MolGlueDB:MGDB427
Local ready
Direct docking supported
E3L066385
LIG000955
compound 11
O=C1CCC(n2cc(C(O)c3ccsc3)nn2)C(=O)N1
C12H12N4O3S
292.320000
MPKZKTBKUBYEAJ-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB1043
Local ready
Direct docking supported
E3L066386
LIG000956
NE-007
O=C1CCC(N2C(=O)c3ccc(F)cc3C2=O)C(=O)N1
C13H9FN2O4
276.223000
MPQLCQKBYRSPNA-UHFFFAOYSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB, e3_ligand, MolGlueDB
BindingDB:BDBM511657; e3_ligand:82; MolGlueDB:MGDB1002
Local ready
Direct docking supported
E3L066389
LIG000959
DS21
Cn1cc(-n2cnc3c(NCc4ccc(-c5ccccn5)cc4)nc(N4CCOCC4)nc32)cn1
C25H25N9O
467.537000
MQFPSSOXZJCSMW-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB552
Local ready
Direct docking supported
E3L066390
LIG000960
analogue 9
O=C1CCC(N2Cc3cccc(CNC(=O)C(F)(F)c4ccccc4)c3C2=O)C(=O)N1
C22H19F2N3O4
427.407000
MQNPLOOPOAFFSB-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB1258
Local ready
Direct docking supported
E3L066391
LIG000961
ALV-07-038-02
CC(=O)c1c(C)c2cnc(Nc3ccc(N4CCN(CCCCOc5ccc(CN6CCC(c7ccc8c(c7)CN(C7CCC(=O)NC7=O)C8=O)CC6)cc5)CC4)cn3)nc2n(C2CCCC2)c1=O
C53H62N10O6
935.143000
MQVKPDGHXUHTJD-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB1529
Local ready
Direct docking supported
E3L066392
LIG000962
SAB401
CC(=O)c1c(C)c2cnc(Nc3ccc(N4CCN(CC(=O)NCCOCCOCCOCC(=O)NCc5cccc6c5CN(C5CCC(=O)NC5=O)C6=O)CC4)cn3)nc2n(C2CCCC2)c1=O
C48H59N11O10
950.067000
MQYZKIADGHEPMA-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB41
Local ready
Direct docking supported
E3L066393
LIG000963
IBG3
Cc1sc2c(c1C)C(c1ccc(CNC(=O)c3ccc(-c4ccc(C5=N[C@@H](CC(=O)OC(C)(C)C)c6nnc(C)n6-c6sc(C)c(C)c65)cc4)cc3)cc1)=N[C@@H](CC(=O)OC(C)(C)C)c1nnc(C)n1-2
C54H57N9O5S2
976.242000
MRIUQCAXSFYTQZ-YATWDLPUSA-N - -
MolGlueDB
MolGlueDB:MGDB270
Local ready
Direct docking supported
E3L066394
LIG000964
CM-3
Cc1ccc(NC(=O)CCCOc2cccc3c2CN(C2CCC(=O)NC2=O)C3=O)cc1Cl
C24H24ClN3O5
469.925000
MRPIWYCYCKIGHP-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB1454
Local ready
Direct docking supported
E3L066395
LIG000965
Lib-B-6A
O=C(COc1ccccc1-c1cccc2c1CN(C1CCC(=O)NC1=O)C2=O)N/N=C/c1ccccc1-c1ccc(C(F)(F)F)cc1
C35H27F3N4O5
640.618000
MSDQPSDRFFHMPH-KZEIVMGFSA-N - -
MolGlueDB
MolGlueDB:MGDB869
Local ready
Direct docking supported
E3L066396
LIG000966
Z5000145518
Cc1cccc(S(=O)(=O)Nc2ccc3c(c2)CN(C2CCC(=O)NC2=O)C3=O)c1
C20H19N3O5S
413.455000
MSGIMIUTQKVWSI-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB379
Local ready
Direct docking supported
E3L066397
LIG000967
cmp5a
Nc1cccc2c1C(=O)N(C1CC(=O)NC1=O)C2=O
C12H9N3O4
259.221000
MSHTVRYXGFREAN-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB824
Local ready
Direct docking supported
E3L066398
LIG000968
23
O=C1CCC(N2Cc3cc(NC4=NOC5C=C(F)C=CC45)ccc3C2=O)C(=O)N1
C20H17FN4O4
396.378000
MSUPGNBTTYIWAD-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB1081
Local ready
Direct docking supported
E3L066399
LIG000969
22a
Cc1ccc(NC(=O)NCc2ccc3nnn(C4CCC(=O)NC4=O)c(=O)c3c2)cc1Cl
C21H19ClN6O4
454.874000
MSXMWXLIMDYAFF-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB353
Local ready
Direct docking supported
E3L066400
LIG000970
LL-K12-1
Cn1cc(-n2cnc3c(NCc4nc5cc(Cl)c(Cl)cc5[nH]4)nc(N4CCNCC4)nc32)cn1
C21H21Cl2N11
498.382000
MTDUZFHXWZPOIU-UHFFFAOYSA-N - -
MolGlueDB
MolGlueDB:MGDB553
Local ready
Direct docking supported
E3L066401
LIG000971
RO8994
COc1cc(C(N)=O)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(C(=O)Nc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C31H31Cl2FN4O4
613.517000
MURAVORBGFDSMA-ISKXDESKSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, e3_ligand
BindingDB:BDBM50446191; e3_ligand:90
Local ready
Direct docking supported