E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L010301
BDB010301
BDBM223046
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCOC[C@H]3c3ccccc3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C30H40N6O3
532.689000
XGVJFXYBZSOQBA-CTVDGRRTSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223046
Local ready
Direct docking supported
E3L010302
BDB010302
BDBM223200
C[C@@H](Nc1nc(-c2noc(=O)[nH]2)nc2nc(N3CCOC[C@H]3c3ccccc3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C31H40N8O3
572.714000
BWYQXHSITMJOOM-CTVDGRRTSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223200
Local ready
Direct docking supported
E3L010303
BDB010303
Kdoam-1
O=C(O)c1ccnc(CN2CCNCC2)c1
C11H15N3O2
221.260000
VRQYPXABZCTNAE-UHFFFAOYSA-N P41229 Lysine-specific demethylase 5C
BindingDB, PubChem
BindingDB:BDBM223317; PubChem:CID126961671
Local ready
Direct docking supported
E3L010304
BDB010304
Kdoam-28
CCNC(=O)c1ccnc(CNCC(=O)N(CC)CCN(C)C)c1
C17H29N5O2
335.452000
WXFDDWMINUVYFL-UHFFFAOYSA-N P29375, P41229, Q9BY66 Lysine-specific demethylase 5A, Lysine-specific demethylase 5C, Lysine-specific demethylase 5D
BindingDB, PubChem
BindingDB:BDBM223318; PubChem:CID126961672
Local ready
Direct docking supported
E3L010305
BDB010305
Kdoam-29
CCN(CCN(C)C)C(=O)CNCc1cc(C(=O)N(C)C)ccn1
C17H29N5O2
335.452000
VHKSSHRSJGZQOV-UHFFFAOYSA-N P29375, P41229, Q9BY66 Lysine-specific demethylase 5D, Lysine-specific demethylase 5C, Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM223319; PubChem:CID126961673
Local ready
Direct docking supported
E3L010306
BDB010306
Kdoam-25
CCN(CCN(C)C)C(=O)CNCc1cc(C(N)=O)ccn1
C15H25N5O2
307.398000
PNFMVADNCOGWME-UHFFFAOYSA-N P29375, P41229, Q9BY66 Lysine-specific demethylase 5A, Lysine-specific demethylase 5C, Lysine-specific demethylase 5D
BindingDB, PubChem
BindingDB:BDBM223320; PubChem:CID91810435
Local ready
Direct docking supported
E3L010307
BDB010307
BDBM223399
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCCC[C@@H]3c3ccccc3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C31H42N6O2
530.717000
KNNKZRXYGBJOGR-NMOFPLQQSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223399
Local ready
Direct docking supported
E3L010308
BDB010308
BDBM223401
C[C@@H](Nc1nc(-c2noc(=O)[nH]2)nc2nc(N3CCCC[C@@H]3c3ccccc3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C32H42N8O2
570.742000
IUMIBSNQDAICDJ-NMOFPLQQSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223401
Local ready
Direct docking supported
E3L010309
BDB010309
BDBM223402
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCCC[C@H]3c3ccccc3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C31H42N6O2
530.717000
KNNKZRXYGBJOGR-XAISMOLKSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223402
Local ready
Direct docking supported
E3L010310
BDB010310
BDBM223405
C[C@@H](Nc1nc(-c2noc(=O)[nH]2)nc2nc(N3CCCC[C@H]3c3ccccc3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C32H42N8O2
570.742000
IUMIBSNQDAICDJ-XAISMOLKSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223405
Local ready
Direct docking supported
E3L010311
BDB010311
BDBM223590
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCCCC3c3cccc(F)c3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C31H41FN6O2
548.707000
MIHTWQRHPGCHEK-FDBHIMERSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223590
Local ready
Direct docking supported
E3L010312
BDB010312
BDBM223591
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCc4ccccc4C3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C29H38N6O2
502.663000
LNNZGVLAPMXBTE-VAMGGRTRSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223591
Local ready
Direct docking supported
E3L010313
BDB010313
BDBM223592
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCCCC3c3ccc(F)cc3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C31H41FN6O2
548.707000
VPBZQLDEBHUVLT-FDBHIMERSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223592
Local ready
Direct docking supported
E3L010314
BDB010314
BDBM223593
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCCCC3c3cccnc3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C30H41N7O2
531.705000
ASKWPPBHHPLPMZ-VRKKQRBZSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223593
Local ready
Direct docking supported
E3L010315
BDB010315
BDBM223594
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCCC4CCCCC43)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C29H44N6O2
508.711000
KOJCLWPAGMFLHG-ONSKCLHQSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223594
Local ready
Direct docking supported
E3L010316
BDB010316
BDBM223595
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCCCC3c3ccccn3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C30H41N7O2
531.705000
DMLDTQPTYLJEEZ-VRKKQRBZSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223595
Local ready
Direct docking supported
E3L010317
BDB010317
BDBM223596
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3CCC4CCCCC4C3)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C29H44N6O2
508.711000
SJZGJACTCZCGST-ONSKCLHQSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223596
Local ready
Direct docking supported
E3L010318
BDB010318
BDBM223598
CC(c1ccccn1)N(C)c1nc2nc(-c3noc(=O)[nH]3)nc(N[C@H](C)C3CCC3)c2n1C[C@H]1CC[C@H](C)CC1
C29H39N9O2
545.692000
KFXZEQWAZQTADD-LAURYZNVSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223598
Local ready
Direct docking supported
E3L010319
BDB010319
BDBM223600
C[C@@H](Nc1nc(C(=O)O)nc2nc(N3C4CCCC3CC4)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C27H40N6O2
480.657000
OSCWMTKQFHWFAJ-GEKRZWMNSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223600
Local ready
Direct docking supported
E3L010320
BDB010320
BDBM223601
C[C@@H](Nc1nc(-c2noc(=O)[nH]2)nc2nc(N3C4CCCC3CC4)n(C[C@H]3CC[C@H](C)CC3)c12)C1CCC1
C28H40N8O2
520.682000
JSQINBDCRIINDH-GEKRZWMNSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM223601
Local ready
Direct docking supported