E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L013821
BDB013821
BDBM312988
CN[C@@H](C)C(=O)N[C@H](C(=O)N1CC[C@@H]2[C@H]1C(=O)N[C@@H](Cc1ccc3ccccc3c1)C(=O)N[C@H](c1nc(=S)o[nH]1)Cc1ccc(cc1)OCc1cn(nn1)[C@@H]1CCN(C(=O)[C@@H](NC(=O)[C@H](C)NC)C(C)(C)C)[C@@H]1C(=O)N[C@@H](Cc1ccc3ccccc3c1)C(=O)N[C@@H](C(=O)O)Cc1ccc(cc1)OCc1cn2nn1)C(C)(C)C
C81H96N18O13S
1561.839000
HLCXKAQSMLQHSZ-CIJDFDRFSA-N P98170, Q13489, Q13490 E3 ubiquitin-protein ligase XIAP, Baculoviral IAP repeat-containing protein 3
BindingDB
BindingDB:BDBM312988
Local ready
Direct docking supported
E3L013822
BDB013822
BDBM312989
CN[C@@H](C)C(=O)N[C@H](C(=O)N1CC[C@@H]2[C@H]1C(=O)N[C@@H](Cc1ccc3ccccc3c1)C(=O)N[C@H](C(=O)O)Cc1ccc(cc1)OCc1cn(nn1)[C@@H]1CCN(C(=O)[C@@H](NC(=O)[C@H](C)NC)C(C)(C)C)[C@@H]1C(=O)N[C@@H](Cc1ccc3ccccc3c1)C(=O)N[C@H](c1nc(=S)o[nH]1)Cc1ccc(cc1)OCc1cn2nn1)C(C)(C)C
C81H96N18O13S
1561.839000
HLCXKAQSMLQHSZ-YZMHPAFASA-N P98170, Q13490 E3 ubiquitin-protein ligase XIAP
BindingDB
BindingDB:BDBM312989
Local ready
Direct docking supported
E3L013823
BDB013823
BDBM312990
CN[C@@H](C)C(=O)N[C@H](C(=O)N1CC[C@@H]2[C@H]1C(=O)N[C@@H](Cc1ccc3ccccc3c1)C(=O)N[C@H](c1nc(=O)o[nH]1)Cc1ccc(cc1)OCc1cn(nn1)[C@@H]1CCN(C(=O)[C@@H](NC(=O)[C@H](C)NC)C(C)(C)C)[C@@H]1C(=O)N[C@@H](Cc1ccc3ccccc3c1)C(=O)N[C@@H](C(=O)O)Cc1ccc(cc1)OCc1cn2nn1)C(C)(C)C
C81H96N18O14
1545.771000
HJBKSCJHQJDSAS-CIJDFDRFSA-N P98170, Q13489, Q13490 E3 ubiquitin-protein ligase XIAP, Baculoviral IAP repeat-containing protein 3
BindingDB
BindingDB:BDBM312990
Local ready
Direct docking supported
E3L013824
BDB013824
BDBM312991
CN[C@@H](C)C(=O)N[C@H](C(=O)N1CC[C@@H]2[C@H]1C(=O)N[C@@H](Cc1ccc3ccccc3c1)C(=O)N[C@H](C(=O)O)Cc1ccc(cc1)OCc1cn(nn1)[C@@H]1CCN(C(=O)[C@@H](NC(=O)[C@H](C)NC)C(C)(C)C)[C@@H]1C(=O)N[C@@H](Cc1ccc3ccccc3c1)C(=O)N[C@H](c1nc(=O)o[nH]1)Cc1ccc(cc1)OCc1cn2nn1)C(C)(C)C
C81H96N18O14
1545.771000
HJBKSCJHQJDSAS-YZMHPAFASA-N P98170, Q13489, Q13490 Baculoviral IAP repeat-containing protein 3, E3 ubiquitin-protein ligase XIAP
BindingDB
BindingDB:BDBM312991
Local ready
Direct docking supported
E3L013825
BDB013825
N4-phenylpyrimidine-2,4-diamine
Nc1nccc(Nc2ccccc2)n1
C10H10N4
186.218000
RFRREALVLUCVCA-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM313203; PubChem:CID239967
Local ready
Direct docking supported
E3L013826
BDB013826
3-(Benzylamino)pyridazine-4-carboxylic acid
O=C(O)c1ccnnc1NCc1ccccc1
C12H11N3O2
229.239000
XYQCJTIQNSFLGQ-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314097; PubChem:CID80517658
Local ready
Direct docking supported
E3L013827
BDB013827
3-[(2-Fluorobenzyl)amino]pyridine-4-carboxylic acid
O=C(O)c1ccncc1NCc1ccccc1F
C13H11FN2O2
246.241000
HPXWQINSNCWZGY-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314098; PubChem:CID81751143
Local ready
Direct docking supported
E3L013828
BDB013828
3-[(3-Fluorobenzyl)amino]pyridine-4-carboxylic acid
O=C(O)c1ccncc1NCc1cccc(F)c1
C13H11FN2O2
246.241000
ZIMGHIAKGUTXHI-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314099; PubChem:CID81750451
Local ready
Direct docking supported
E3L013829
BDB013829
3-[(4-Fluorobenzyl)amino]pyridine-4-carboxylic acid
O=C(O)c1ccncc1NCc1ccc(F)cc1
C13H11FN2O2
246.241000
LEJXPLDUYCZSQX-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314100; PubChem:CID81750967
Local ready
Direct docking supported
E3L013830
BDB013830
3-[(4-Cyanobenzyl)amino]pyridine-4-carboxylic acid
N#Cc1ccc(CNc2cnccc2C(=O)O)cc1
C14H11N3O2
253.261000
XHBZDRRWWYEHQM-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314101; PubChem:CID86728195
Local ready
Direct docking supported
E3L013831
BDB013831
BDBM314102
O=C(O)c1ccncc1NCc1ccc(CO)cc1
C14H14N2O3
258.277000
TWIVONJBMAMBGR-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314102; PubChem:CID90253477
Local ready
Direct docking supported
E3L013832
BDB013832
3-[(4-Methoxybenzyl)amino]pyridine-4-carboxylic acid
COc1ccc(CNc2cnccc2C(=O)O)cc1
C14H14N2O3
258.277000
XKZFNTZMCLZYHZ-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314103; PubChem:CID59699608
Local ready
Direct docking supported
E3L013833
BDB013833
BDBM314104
O=C(O)c1ccncc1NCc1ccc(C(F)(F)F)cc1
C14H11F3N2O2
296.248000
GJPYGTAPZPFLDE-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314104; PubChem:CID81753337
Local ready
Direct docking supported
E3L013834
BDB013834
BDBM314105
O=C(O)c1ccncc1NCc1ccc(-c2ccccc2)cc1
C19H16N2O2
304.349000
RNBCOBWQQCESLL-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314105; PubChem:CID71766727
Local ready
Direct docking supported
E3L013835
BDB013835
3-[(4-Chlorobenzyl)amino]pyridine-4-carboxylic acid
O=C(O)c1ccncc1NCc1ccc(Cl)cc1
C13H11ClN2O2
262.696000
YLPWFJOZJJBYAK-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314106; PubChem:CID81749951
Local ready
Direct docking supported
E3L013836
BDB013836
BDBM314107
CC(C)Oc1ccc(CNc2cnccc2C(=O)O)cc1
C16H18N2O3
286.331000
SVSRSWVLYKMWNZ-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314107; PubChem:CID86728198
Local ready
Direct docking supported
E3L013837
BDB013837
3-[(4-Phenoxybenzyl)amino]pyridine-4-carboxylic acid
O=C(O)c1ccncc1NCc1ccc(Oc2ccccc2)cc1
C19H16N2O3
320.348000
CWCFXUDVLORTBW-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314108; PubChem:CID86728199
Local ready
Direct docking supported
E3L013838
BDB013838
US9611221, Example 13
CN(C)Cc1ccccc1CNc1cnccc1C(=O)O
C16H19N3O2
285.347000
XEQKUHVVPCZDLL-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314109; PubChem:CID90237096
Local ready
Direct docking supported
E3L013839
BDB013839
3-[(3,4-Dichlorobenzyl)amino]pyridine-4-carboxylic acid
O=C(O)c1ccncc1NCc1ccc(Cl)c(Cl)c1
C13H10Cl2N2O2
297.141000
IRAZPDXDKSGWPW-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314110; PubChem:CID86728201
Local ready
Direct docking supported
E3L013840
BDB013840
BDBM314111
Cc1cc(Cl)ccc1CNc1cnccc1C(=O)O
C14H13ClN2O2
276.723000
IAJCQFONENFREM-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM314111; PubChem:CID86728203
Local ready
Direct docking supported