E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L016601
BDB016601
US10239861, Example 56
Cn1ncc(NC2CCCN(Cc3ccc(F)cc3)C2)c(Cl)c1=O
C17H20ClFN4O
350.825000
HAJDMVOUJGHBCO-UHFFFAOYSA-N Q92831 Histone acetyltransferase KAT2B
BindingDB, PubChem
BindingDB:BDBM371576; PubChem:CID121476442
Local ready
Direct docking supported
E3L016602
BDB016602
US10239861, Example 57
CN1CCCC[C@H](Nc2cnn(C)c(=O)c2Cl)C1
C12H19ClN4O
270.764000
FFWRQIIGTISRFA-VIFPVBQESA-N Q92831 Histone acetyltransferase KAT2B
BindingDB, PubChem
BindingDB:BDBM371577; PubChem:CID121472625
Local ready
Direct docking supported
E3L016603
BDB016603
US10239861, Example 58
CN1CCCC[C@@H](Nc2cnn(C)c(=O)c2Cl)C1
C12H19ClN4O
270.764000
FFWRQIIGTISRFA-SECBINFHSA-N Q92831 Histone acetyltransferase KAT2B
BindingDB, PubChem
BindingDB:BDBM371578; PubChem:CID121472670
Local ready
Direct docking supported
E3L016604
BDB016604
BDBM373122
Cn1cnc(-c2cc(-c3nn[nH]c3C#N)ccn2)c1-c1ccc(F)cc1OCC1CC1
C22H18FN7O
415.432000
ITGGNHLGYPVAEF-UHFFFAOYSA-N Q8NHM5 Lysine-specific demethylase 2B
BindingDB, PubChem
BindingDB:BDBM373122; PubChem:CID118956771
Local ready
Direct docking supported
E3L016605
BDB016605
BDBM373162
FC(F)(F)COc1ccccc1Cn1cnc(-c2cc(-c3nn[nH]c3C(F)(F)F)ccn2)c1
C20H14F6N6O
468.361000
WHMPVBWIYHEQGL-UHFFFAOYSA-N Q8NHM5 Lysine-specific demethylase 2B
BindingDB, PubChem
BindingDB:BDBM373162; PubChem:CID121454398
Local ready
Direct docking supported
E3L016606
BDB016606
BDBM373163
Fc1ccc(CCn2cnc(-c3cc(-c4nn[nH]c4C(F)(F)F)ccn3)c2)cc1
C19H14F4N6
402.355000
JIJUDABPAABLQY-UHFFFAOYSA-N Q8NHM5 Lysine-specific demethylase 2B
BindingDB, PubChem
BindingDB:BDBM373163; PubChem:CID121454346
Local ready
Direct docking supported
E3L016607
BDB016607
Repotrectinib
C[C@H]1CNC(=O)c2cnn3ccc(nc23)N[C@H](C)c2cc(F)ccc2O1
C18H18FN5O2
355.373000
FIKPXCOQUIZNHB-WDEREUQCSA-N Q9HC35 ALK tyrosine kinase receptor
BindingDB, PubChem
BindingDB:BDBM374727; PubChem:CID135565923
Local ready
Direct docking supported
E3L016608
BDB016608
US10246467, Example I-1
O=C(O)c1ccc2c3n(nc2c1)[C@@H]1[C@H](CO3)N(CC2CC2)[C@@]2(C(=O)Nc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C30H23Cl2FN4O4
593.442000
YZMITHOPDOPJBH-HLNVOFQHSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374730; PubChem:CID130376431
Local ready
Direct docking supported
E3L016609
BDB016609
US10246467, Example I-3
O=C(O)c1ccc2c3n(nc2c1)[C@H]1[C@@H](CO3)N(CC2CC2)[C@]2(C(=O)Nc3cc(Cl)ccc32)[C@@H]1c1cccc(Cl)c1F
C30H23Cl2FN4O4
593.442000
YZMITHOPDOPJBH-NFDQLLMUSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374732; PubChem:CID130376432
Local ready
Direct docking supported
E3L016610
BDB016610
US10246467, Example I-4
O=C(O)c1ccc2nn3c(c2c1)OC[C@H]1[C@@H]3[C@H](c2cccc(Cl)c2F)[C@]2(C(=O)Nc3cc(Cl)ccc32)N1CC1CC1
C30H23Cl2FN4O4
593.442000
JJCQXIRROLOGAC-HLNVOFQHSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374733; PubChem:CID130376433
Local ready
Direct docking supported
E3L016611
BDB016611
US10246467, Example I-6
O=C(O)c1ccc2nn3c(c2c1)OC[C@@H]1[C@H]3[C@@H](c2cccc(Cl)c2F)[C@@]2(C(=O)Nc3cc(Cl)ccc32)N1CC1CC1
C30H23Cl2FN4O4
593.442000
JJCQXIRROLOGAC-NFDQLLMUSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374735; PubChem:CID130376434
Local ready
Direct docking supported
E3L016612
BDB016612
US10246467, Example I-7
COc1cc2c3n(nc2cc1C(=O)O)[C@@H]1[C@H](CO3)N(CC2CC2)[C@@]2(C(=O)Nc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C31H25Cl2FN4O5
623.468000
XUVCZAVRKYNTAO-RXRCSWILSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374736; PubChem:CID130376344
Local ready
Direct docking supported
E3L016613
BDB016613
US10246467, Example I-9
COc1cc2c3n(nc2cc1C(=O)O)[C@H]1[C@@H](CO3)N(CC2CC2)[C@]2(C(=O)Nc3cc(Cl)ccc32)[C@@H]1c1cccc(Cl)c1F
C31H25Cl2FN4O5
623.468000
XUVCZAVRKYNTAO-OVRLWXHPSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374738; PubChem:CID118895882
Local ready
Direct docking supported
E3L016614
BDB016614
US10246467, Example I-10
COc1cc2nn3c(c2cc1C(=O)O)OC[C@H]1[C@@H]3[C@H](c2cccc(Cl)c2F)[C@]2(C(=O)Nc3cc(Cl)ccc32)N1CC1CC1
C31H25Cl2FN4O5
623.468000
JURMESUCSRKLSS-RXRCSWILSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374739; PubChem:CID130376435
Local ready
Direct docking supported
E3L016615
BDB016615
US10246467, Example I-12
COc1cc2nn3c(c2cc1C(=O)O)OC[C@@H]1[C@H]3[C@@H](c2cccc(Cl)c2F)[C@@]2(C(=O)Nc3cc(Cl)ccc32)N1CC1CC1
C31H25Cl2FN4O5
623.468000
JURMESUCSRKLSS-OVRLWXHPSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374741; PubChem:CID130376436
Local ready
Direct docking supported
E3L016616
BDB016616
US10246467, Example I-13
CS(=O)(=O)c1ccc2c3n(nc2c1)[C@@H]1[C@H](CO3)N(CC2CC2)[C@@]2(C(=O)Nc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C30H25Cl2FN4O4S
627.525000
VDSFSAYTPKMMRH-VBVRERCOSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374742; PubChem:CID130376437
Local ready
Direct docking supported
E3L016617
BDB016617
US10246467, Example I-15
CS(=O)(=O)c1ccc2c3n(nc2c1)[C@H]1[C@@H](CO3)N(CC2CC2)[C@]2(C(=O)Nc3cc(Cl)ccc32)[C@@H]1c1cccc(Cl)c1F
C30H25Cl2FN4O4S
627.525000
VDSFSAYTPKMMRH-RRRLRPSDSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374744; PubChem:CID130376438
Local ready
Direct docking supported
E3L016618
BDB016618
US10246467, Example I-16
COc1cc2nn3c(c2cc1C#N)OC[C@H]1[C@@H]3[C@H](c2cccc(Cl)c2F)[C@]2(C(=O)Nc3cc(Cl)ccc32)N1CC1CC1
C31H24Cl2FN5O3
604.469000
DBQQVGHPOOQHRX-XYKPQQNDSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374745; PubChem:CID130376440
Local ready
Direct docking supported
E3L016619
BDB016619
US10246467, Example I-28
C[C@H]1Oc2c3ccc(C(=O)O)cc3nn2[C@@H]2[C@H]1N(CC1CC1)[C@@]1(C(=O)Nc3cc(Cl)ccc31)[C@H]2c1cccc(Cl)c1F
C31H25Cl2FN4O4
607.469000
SDVAEDVASKNSQX-CPMVGPJYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374746; PubChem:CID130376445
Local ready
Direct docking supported
E3L016620
BDB016620
US10246467, Example I-29
C[C@H]1Oc2c3ccc(C(=O)O)cc3nn2[C@H]2[C@@H]1N(CC1CC1)[C@]1(C(=O)Nc3cc(Cl)ccc31)[C@@H]2c1cccc(Cl)c1F
C31H25Cl2FN4O4
607.469000
SDVAEDVASKNSQX-IREGEPEUSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM374747; PubChem:CID130376446
Local ready
Direct docking supported