E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L030661
BDB030661
BDBM617516
CN1CCN(c2ccc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)cc2NC(=O)c2ccc(F)c(C(F)(F)F)c2)CC1
C29H34F4N8O3
618.636000
FOVWBSYLWCHKAC-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617516; PubChem:CID168679379
Local ready
Direct docking supported
E3L030662
BDB030662
Amezalpat
CCOc1ccc(-c2cccc(CCCc3nn(Cc4ccc(C(C)(C)C)cc4)c(=O)n3CC)c2)cc1CC(=O)O
C34H41N3O4
555.719000
KUPVZYDOHAPPNF-UHFFFAOYSA-N P37231, Q07869 Peroxisome proliferator-activated receptor alpha, Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM617517; PubChem:CID76285852
Local ready
Direct docking supported
E3L030663
BDB030663
BDBM617518
Cc1cc(C)cc(C(=O)Nc2cc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)ccc2N2CCN(C)CC2)c1
C30H40N8O3
560.703000
VRMQMMDYSBYDCQ-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617518; PubChem:CID168679380
Local ready
Direct docking supported
E3L030664
BDB030664
BDBM617519
CN1CCN(c2ccc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)cc2NC(=O)c2cc(Cl)cc(Cl)c2)CC1
C28H34Cl2N8O3
601.539000
BIVNEGUQALNGBE-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617519; PubChem:CID168679381
Local ready
Direct docking supported
E3L030665
BDB030665
BDBM617520
CN1CCN(c2ccc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)cc2NC(=O)c2cc(O)cc(C(F)(F)F)c2)CC1
C29H35F3N8O4
616.645000
AGUJNFYYINFUHH-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617520; PubChem:CID168679382
Local ready
Direct docking supported
E3L030666
BDB030666
BDBM617521
CN1CCN(c2ccc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)cc2NC(=O)c2cc(O)cc(F)c2F)CC1
C28H34F2N8O4
584.628000
IFGDIJKPPDBEPZ-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617521; PubChem:CID168679383
Local ready
Direct docking supported
E3L030667
BDB030667
BDBM617522
CN1CCN(c2ccc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)cc2NC(=O)c2nn(C)c3ccccc23)CC1
C30H38N10O3
586.701000
ABQIWKYBRKUULQ-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617522; PubChem:CID168679384
Local ready
Direct docking supported
E3L030668
BDB030668
BDBM617523
Cc1c(F)ccc(C(=O)Nc2cc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)c(F)cc2N2CCN(C)CC2)c1Cl
C29H35ClF2N8O3
617.101000
ATUNNVWCKUKSQK-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617523; PubChem:CID168679385
Local ready
Direct docking supported
E3L030669
BDB030669
BDBM617524
CCN(CC)C(=O)c1cn(-c2cc(NC(=O)c3cc(N)c(F)c(C)c3Cl)c(N3C[C@@H](C)N(C)[C@@H](C)C3)cc2F)nn1
C28H35ClF2N8O2
589.091000
ZXHKWXJHZNMEBY-IYBDPMFKSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617524; PubChem:CID168679386
Local ready
Direct docking supported
E3L030670
BDB030670
BDBM617525
Cc1c(F)c(N)cc(C(=O)Nc2cc(-n3cc(C(=O)N4CCOCC4)nn3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)c1Cl
C28H33ClF2N8O3
603.074000
VZBVNPMSSKIZIR-IYBDPMFKSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617525; PubChem:CID168679387
Local ready
Direct docking supported
E3L030671
BDB030671
formula IIIb [WO2023177592]
Cc1c(F)c(N)cc(C(=O)Nc2cc(-n3cc(C(=O)N4CCN(C)CC4)nn3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)c1Cl
C29H36ClF2N9O2
616.117000
ZAAAXOTWIKLEGP-CALCHBBNSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617526; PubChem:CID168679388
Local ready
Direct docking supported
E3L030672
BDB030672
BDBM617528
Cc1c(F)c(N)cc(C(=O)Nc2cc(-n3cc(C(=O)NC4CCCCC4)nn3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)c1Cl
C30H37ClF2N8O2
615.129000
JXQTVWSUMTYJKP-CALCHBBNSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617528; PubChem:CID168679389
Local ready
Direct docking supported
E3L030673
BDB030673
BDBM617529
Cc1c(F)c(N)cc(C(=O)Nc2cc(-n3cc(C(=O)NC4CCOCC4)nn3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)c1Cl
C29H35ClF2N8O3
617.101000
LPIDLPNUIRWPLW-IYBDPMFKSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617529; PubChem:CID168679390
Local ready
Direct docking supported
E3L030674
BDB030674
BDBM617530
Cc1c(F)c(N)cc(C(=O)Nc2cc(-n3cc(C(=O)NC4CCN(C)CC4)nn3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)c1Cl
C30H38ClF2N9O2
630.144000
JKYKRBWPDXKTNA-CALCHBBNSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM617530
Local ready
Direct docking supported
E3L030675
BDB030675
BDBM617531
Cc1c(F)c(N)cc(C(=O)Nc2cc(-n3cc(C(=O)NCCCN4CCN(C)CC4)nn3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)c1Cl
C32H43ClF2N10O2
673.213000
RMWRJJKYEBHVKT-BGYRXZFFSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM617531
Local ready
Direct docking supported
E3L030676
BDB030676
BDBM617532
Cc1c(F)c(N)cc(C(=O)Nc2cc(-n3cc(C(=O)NCC4CCCCC4)nn3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)c1Cl
C31H39ClF2N8O2
629.156000
OVFWZPRZFJQFTG-HDICACEKSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617532; PubChem:CID168679393
Local ready
Direct docking supported
E3L030677
BDB030677
BDBM617672
CN1CCN(c2ccc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C28H34F3N9O4
617.633000
GMSPHUWKTGKYAX-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617672; PubChem:CID169052377
Local ready
Direct docking supported
E3L030678
BDB030678
BDBM617673
CN1CCN(c2ccc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)cc2NC(=O)c2cnc(Cl)cc2C(F)(F)F)CC1
C28H33ClF3N9O3
636.079000
PMHZGZVEQXMNKB-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617673; PubChem:CID168679403
Local ready
Direct docking supported
E3L030679
BDB030679
BDBM617674
C[C@H]1CN(c2ccc(-n3cc(C(=O)NCCCN4CCOCC4)nn3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C
C29H36F3N9O4
631.660000
FSXXWYTYGCHOGK-IBGZPJMESA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617674; PubChem:CID169052300
Local ready
Direct docking supported
E3L030680
BDB030680
BDBM617675
CN1CCN(c2cc(F)c(-n3cc(C(=O)NCCCN4CCOCC4)nn3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C28H33F4N9O4
635.623000
HZZUZGYPEWWYLD-UHFFFAOYSA-N P61964, Q03164 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM617675; PubChem:CID169052470
Local ready
Direct docking supported