E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L035181
BDB035181
US20240409538, Example 37
COc1ncnc(C2CC2)c1-c1nc2cccc(Cc3ccc(-c4nc(C(F)(F)F)cn4C4CC4)cc3)n2n1
C28H24F3N7O
531.542000
DMRPWLKYYVBJHM-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM707433; PubChem:CID171782549
Local ready
Direct docking supported
E3L035182
BDB035182
US20240409538, Example 38
COc1ncnc(C2CC2)c1-c1nc2cccc(Cc3ccc(-c4nc(C(F)(F)F)cn4C)c(F)c3)n2n1
C26H21F4N7O
523.494000
ZRFOGKGKYXYIFB-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM707434; PubChem:CID171782540
Local ready
Direct docking supported
E3L035183
BDB035183
US20240409538, Example 39
CCn1cc(C(F)(F)F)nc1-c1c(F)cc(Cc2cccc3nc(-c4c(OC)ncnc4C4CC4)nn23)cc1OC
C28H25F4N7O2
567.547000
ABCVQYPJWJHXES-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM707435; PubChem:CID171782541
Local ready
Direct docking supported
E3L035184
BDB035184
US20240409538, Example 40
COc1ncnc(C2CC2)c1-c1nc2ccnc(Cc3ccc(-c4nc(C(F)(F)F)cn4C4CC4)cc3)n2n1
C27H23F3N8O
532.530000
MSCRRWAJDNCFQA-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM707436; PubChem:CID171782546
Local ready
Direct docking supported
E3L035185
BDB035185
US20240409538, Example 41
COc1ncnc(C2CC2)c1-c1nc2ccnc(Cc3ccc(-c4nc(C(F)(F)F)cn4C)c(F)c3)n2n1
C25H20F4N8O
524.482000
JBSPSTRVVQCBDR-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM707437; PubChem:CID171782534
Local ready
Direct docking supported
E3L035186
BDB035186
US20240409538, Example 42
CCn1cc(C(F)(F)F)nc1-c1c(F)cc(Cc2nccc3nc(-c4c(OC)ncnc4C4CC4)nn23)cc1F
C26H21F5N8O
556.499000
TXBFKMKAZCMKGU-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM707438; PubChem:CID171782557
Local ready
Direct docking supported
E3L035187
BDB035187
US20240409538, Example 43
COc1ncnc(C2CC2)c1-c1nc2cncc(Cc3ccc(-c4nc(C(F)(F)F)cn4C4CC4)cc3)n2n1
C27H23F3N8O
532.530000
UGVFUAUPJGYYEW-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM707439; PubChem:CID171782558
Local ready
Direct docking supported
E3L035188
BDB035188
US20240409538, Example 44
COc1ncnc(C2CC2)c1-c1nc2cncc(Cc3ccc(-c4nc(C(F)(F)F)cn4C)c(F)c3)n2n1
C25H20F4N8O
524.482000
VDJWGMDWYIPSLQ-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM707440; PubChem:CID171782527
Local ready
Direct docking supported
E3L035189
BDB035189
US20240409538, Example 45
CCn1cc(C(F)(F)F)nc1-c1c(F)cc(Cc2cncc3nc(-c4c(OC)ncnc4C4CC4)nn23)cc1F
C26H21F5N8O
556.499000
ASRKYTPJDUUEKD-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM707441; PubChem:CID171782539
Local ready
Direct docking supported
E3L035190
BDB035190
PROTAC BTK Degrader-10
Cc1cc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)cc5)C[C@@H]4C)cn3)ncn2)ccc1[C@@H](C)NC(=O)c1nc(C(C)(C)C)no1
C42H49N11O4
771.927000
IFISVDOJTJUTBK-WUFINQPMSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708085; PubChem:CID169081326
Local ready
Direct docking supported
E3L035191
BDB035191
US12172992, Example 2
Cc1cc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)cc5)C[C@H]4C)cn3)ncn2)ccc1[C@@H](C)NC(=O)c1nc(C(C)(C)C)no1
C42H49N11O4
771.927000
IFISVDOJTJUTBK-VSGBNLITSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708086; PubChem:CID169081263
Local ready
Direct docking supported
E3L035192
BDB035192
US12172992, Example 3
Cc1cc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)cc5)CC4)cn3)ncn2)ccc1[C@@H](C)NC(=O)c1nc(C(C)(C)C)no1
C41H47N11O4
757.900000
XTTYHHPEDDXLEH-HHHXNRCGSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708087; PubChem:CID169081264
Local ready
Direct docking supported
E3L035193
BDB035193
US12172992, Example 4
Cc1cc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)c(F)c5)C[C@@H]4C)cn3)ncn2)ccc1[C@@H](C)NC(=O)c1nc(C(C)(C)C)no1
C42H48FN11O4
789.917000
XZWLTIJDAOOAOZ-RRPNLBNLSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708088; PubChem:CID169081285
Local ready
Direct docking supported
E3L035194
BDB035194
US12172992, Example 5
Cc1cc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)c(F)c5)C[C@H]4C)cn3)ncn2)ccc1[C@@H](C)NC(=O)c1nc(C(C)(C)C)no1
C42H48FN11O4
789.917000
XZWLTIJDAOOAOZ-KAYWLYCHSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708089; PubChem:CID169081270
Local ready
Direct docking supported
E3L035195
BDB035195
US12172992, Example 6
CC[C@H]1CN(CCc2ccc(N3CCC(=O)NC3=O)cc2)CCN1c1ccc(Nc2cc(-c3ccc([C@@H](C)NC(=O)c4nc(C(C)(C)C)no4)c(C)c3)ncn2)nc1
C43H51N11O4
785.954000
HJKHARHYGJCYLQ-MVSFAKPFSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708090; PubChem:CID169081318
Local ready
Direct docking supported
E3L035196
BDB035196
US12172992, Example 7
CC[C@H]1CN(CCc2ccc(N3CCC(=O)NC3=O)c(F)c2)CCN1c1ccc(Nc2cc(-c3ccc([C@@H](C)NC(=O)c4nc(C(C)(C)C)no4)c(C)c3)ncn2)nc1
C43H50FN11O4
803.944000
ZXUCGFSMGYJNRI-OFSOJUDTSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708091; PubChem:CID169081340
Local ready
Direct docking supported
E3L035197
BDB035197
US12172992, Example 8
CC[C@@H]1CN(CCc2ccc(N3CCC(=O)NC3=O)cc2)CCN1c1ccc(Nc2cc(-c3ccc([C@@H](C)NC(=O)c4nc(C(C)(C)C)no4)c(C)c3)ncn2)nc1
C43H51N11O4
785.954000
HJKHARHYGJCYLQ-GRKNLSHJSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708092; PubChem:CID169081311
Local ready
Direct docking supported
E3L035198
BDB035198
US12172992, Example 9
Cc1cc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)cc5)CC4(C)C)cn3)ncn2)ccc1[C@@H](C)NC(=O)c1nc(C(C)(C)C)no1
C43H51N11O4
785.954000
FFERLSHFMZMHLG-MUUNZHRXSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708093; PubChem:CID169081338
Local ready
Direct docking supported
E3L035199
BDB035199
US12172992, Example 10
Cc1c([C@@H](C)NC(=O)c2nc(C(C)(C)C)no2)ccc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)cc5)C[C@@H]4C)cn3)ncn2)c1F
C42H48FN11O4
789.917000
HKJLLZRGVOIGSI-AHKZPQOWSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708094; PubChem:CID169081341
Local ready
Direct docking supported
E3L035200
BDB035200
US12172992, Example 11
Cc1c([C@@H](C)NC(=O)c2nc(C(C)(C)C)no2)ccc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)cc5)CC4)cn3)ncn2)c1F
C41H46FN11O4
775.890000
DXAMCKURBGAPRL-AREMUKBSSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM708095; PubChem:CID169081291
Local ready
Direct docking supported