E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L040681
BDB040681
US20250257055, Example 30
CCn1cc(-c2ccc3c(c2)[C@H](F)C[C@]32NC(=O)N(CC(=O)N(Cc3ccc(F)cc3)C3(C(F)(F)F)CN(C)C3)C2=O)cn1
C30H29F5N6O3
616.591000
AMMLBLXPKVTDJJ-GIGWZHCTSA-N Q09472 Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM764592; PubChem:CID176862016
Local ready
Direct docking supported
E3L040682
BDB040682
US20250257055, Example 31
CC(C)n1cc(-c2ccc3c(c2)[C@H](F)C[C@]32NC(=O)N(CC(=O)N(Cc3ccc(F)cc3)C3(C(F)(F)F)CN(C)C3)C2=O)cn1
C31H31F5N6O3
630.618000
GMWJOJAVQDJWLP-RNAHPLFWSA-N Q09472 Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM764593; PubChem:CID176862009
Local ready
Direct docking supported
E3L040683
BDB040683
US20250257055, Example 32
CCn1cc(-c2ccc3c(c2)[C@H](F)C[C@]32NC(=O)N(CC(=O)N(Cc3ccc(F)cn3)C3(C(F)(F)F)CN(C)C3)C2=O)cn1
C29H28F5N7O3
617.579000
OJCJBSVDYBMCLG-LXFBAYGMSA-N Q09472 Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM764594; PubChem:CID176862015
Local ready
Direct docking supported
E3L040684
BDB040684
US20250257055, Example 33
CC(C)n1cc(-c2ccc3c(c2)[C@H](F)C[C@]32NC(=O)N(CC(=O)N(Cc3ccc(F)cn3)C3(C(F)(F)F)CN(C)C3)C2=O)cn1
C30H30F5N7O3
631.606000
BEGITSSNCCVVNP-GIGWZHCTSA-N Q09472 Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM764595; PubChem:CID176861968
Local ready
Direct docking supported
E3L040685
BDB040685
US20250257055, Example 34
CN1CC(N(Cc2ccc(F)cn2)C(=O)CN2C(=O)N[C@]3(C[C@@H](F)c4cc(-c5cnn(C6CCC6)c5)ccc43)C2=O)(C(F)(F)F)C1
C31H30F5N7O3
643.617000
AXUWOPMZIMEOGX-RNAHPLFWSA-N Q09472 Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM764596; PubChem:CID176861990
Local ready
Direct docking supported
E3L040686
BDB040686
US20250257055, Example 35
CN1CC(N(Cc2ccc(C(F)(F)F)cc2)C(=O)CN2C(=O)N[C@]3(C[C@@H](F)c4cc(-c5cnn(C)c5)ccc43)C2=O)(C(F)(F)F)C1
C30H27F7N6O3
652.571000
NXUZCURQFURQPB-LXFBAYGMSA-N Q09472 Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM764597; PubChem:CID176861977
Local ready
Direct docking supported
E3L040687
BDB040687
BDBM765774
O=C1CCC(c2c(F)cc(N3CC(NC(=O)OCC4CC5(CCC5)C4)C3)cc2F)C(=O)N1
C23H27F2N3O4
447.482000
IXZNKWIZJRGUSP-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765774; PubChem:CID171541181
Local ready
Direct docking supported
E3L040688
BDB040688
BDBM765775
COc1c(N2CC(C)(NC(=O)OCC3CC4(CCC4)C3)C2)ccc(C2CCC(=O)NC2=O)c1F
C25H32FN3O5
473.545000
XEUZOKIVSMPTKW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765775; PubChem:CID171541256
Local ready
Direct docking supported
E3L040689
BDB040689
CDK2 degrader 1
O=C1CCC(c2c(F)cc(N3CC(NC(=O)OC[C@@H]4C[C@H]5CC[C@@H]4C5)C3)cc2F)C(=O)N1
C23H27F2N3O4
447.482000
KUTYUVCSHRYCRH-QYCFJQJSSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765776; PubChem:CID171540987
Local ready
Direct docking supported
E3L040690
BDB040690
BDBM765777
O=C1CCC(c2c(F)cc(N3CC(NC(=O)OC45CC(C(=O)c6ccccc6)(C4)C5)C3)cc2F)C(=O)N1
C27H25F2N3O5
509.509000
XGUZWITYIMHDPA-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765777; PubChem:CID171541247
Local ready
Direct docking supported
E3L040691
BDB040691
BDBM765778
O=C1CCC(c2c(F)cc(N3CC(NC(=O)OC4CN(C(=O)N5Cc6ccccc6C5)C4)C3)cc2F)C(=O)N1
C27H27F2N5O5
539.539000
QTTHIYACYMRYLP-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765778; PubChem:CID171540844
Local ready
Direct docking supported
E3L040692
BDB040692
BDBM765779
Cc1ccnc(N2CC(OC(=O)NC3CN(c4cc(F)c(C5CCC(=O)NC5=O)c(F)c4)C3)C2)c1
C24H25F2N5O4
485.491000
ZGQHHJROSOPECR-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765779; PubChem:CID171540859
Local ready
Direct docking supported
E3L040693
BDB040693
BDBM765780
Cn1nccc1N1CC(OC(=O)NC2CN(c3cc(F)c(C4CCC(=O)NC4=O)c(F)c3)C2)C1
C22H24F2N6O4
474.468000
SMVYGMLXROJBPU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765780; PubChem:CID171540980
Local ready
Direct docking supported
E3L040694
BDB040694
BDBM765781
CN(C(=O)N1CC(OC(=O)NC2CN(c3cc(F)c(C4CCC(=O)NC4=O)c(F)c3)C2)C1)c1cccc(Cl)c1
C26H26ClF2N5O5
561.973000
CVOSRXFICVQGAI-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765781; PubChem:CID171540830
Local ready
Direct docking supported
E3L040695
BDB040695
BDBM765782
O=C1CCC(c2c(F)cc(N3CC(NC(=O)OC4CN(C(=O)N5CCc6ccccc65)C4)C3)cc2F)C(=O)N1
C27H27F2N5O5
539.539000
DXOCNJNNJCUOND-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765782; PubChem:CID171540857
Local ready
Direct docking supported
E3L040696
BDB040696
BDBM765783
Cc1cccc(N(C)C(=O)N2CC(OC(=O)NC3CN(c4cc(F)c(C5CCC(=O)NC5=O)c(F)c4)C3)C2)c1
C27H29F2N5O5
541.555000
VMOBPDSFPKGGMV-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765783; PubChem:CID171540995
Local ready
Direct docking supported
E3L040697
BDB040697
BDBM765784
CN(C(=O)N1CC(OC(=O)NC2(C(F)(F)F)CN(c3cc(F)c(C4CCC(=O)NC4=O)c(F)c3)C2)C1)C1CC1
C24H26F5N5O5
559.492000
LFIFQXKWBNIYLV-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765784; PubChem:CID171541074
Local ready
Direct docking supported
E3L040698
BDB040698
BDBM765785
CN(C(=O)N1CC(OC(=O)NC2(C)CN(c3cc(F)c(C4CCC(=O)NC4=O)c(F)c3)C2)C1)C1CC1
C24H29F2N5O5
505.522000
OQFSJDPOVSMWQU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765785; PubChem:CID171541162
Local ready
Direct docking supported
E3L040699
BDB040699
BDBM765786
COc1ccc(N(C)C(=O)N2CC(OC(=O)NC3CN(c4cc(F)c(C5CCC(=O)NC5=O)c(F)c4)C3)C2)cc1
C27H29F2N5O6
557.554000
LQXLMDSSFKFBRW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765786; PubChem:CID171541123
Local ready
Direct docking supported
E3L040700
BDB040700
BDBM765787
CN(C)C(=O)N1CC(OC(=O)NC2(C)CN(c3cc(F)c(C4CCC(=O)NC4=O)c(F)c3)C2)C1
C22H27F2N5O5
479.484000
BZFPUFLEHCVIMC-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM765787; PubChem:CID171541359
Local ready
Direct docking supported