E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L004381
BDB004381
BDBM98679
CCOC[C@@H](CC(C)C)NC(=O)[C@@H]1CNC[C@H](C(=O)N(c2cc(OC)c(C(C)C)cn2)C2CC2)C1
C27H44N4O4
488.673000
AOJMWYPUZRQUTK-PWRODBHTSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM98679; PubChem:CID25143367
Local ready
Direct docking supported
E3L004382
BDB004382
BDBM98680
CCOC[C@@H](NC(=O)[C@@H]1CNC[C@H](C(=O)N(c2cc(OC)c(C(C)C)cn2)C2CC2)C1)C1CCCCC1
C29H46N4O4
514.711000
YACOWXLDNACKBP-SGIRGMQISA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM98680; PubChem:CID25110595
Local ready
Direct docking supported
E3L004383
BDB004383
BDBM98681
CCOC[C@H](NC(=O)[C@@H]1CNC[C@H](C(=O)N(c2ccc(C(C)C)cn2)C2CC2)[C@@H]1O)C(C)C
C25H40N4O4
460.619000
SRMVCYYZYNDTCC-BESBDSHLSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM98681; PubChem:CID25143507
Local ready
Direct docking supported
E3L004384
BDB004384
BDBM98682
CCOC[C@@H](CC(C)C)NC(=O)[C@@H]1CNC[C@H](C(=O)N(CC(C)C)c2cc(OC)c(C(C)C)cn2)C1
C28H48N4O4
504.716000
DTAYEDRKQOIBAU-YTFSRNRJSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM98682; PubChem:CID25143368
Local ready
Direct docking supported
E3L004385
BDB004385
BDBM98683
CCOC[C@@H](CC(C)C)NC(=O)[C@@H]1CNC[C@H](C(=O)N(c2ccc(C(C)(C)OC)cn2)C2CC2)[C@@H]1O
C27H44N4O5
504.672000
LCKJHNVSFHSWNK-CNIHBODFSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM98683; PubChem:CID25143508
Local ready
Direct docking supported
E3L004386
BDB004386
BDBM98684
CCOC[C@@H](CC(C)C)NC(=O)[C@@H]1CNC[C@H](C(=O)N(c2cc(OCC)c(CC)cn2)C2CC2)C1
C27H44N4O4
488.673000
ALDJQYJOXDCKFF-BHDDXSALSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM98684; PubChem:CID25141650
Local ready
Direct docking supported
E3L004387
BDB004387
BDBM98685
CCOC[C@@H](CC(C)C)NC(=O)[C@@H]1CNC[C@H](C(=O)N(c2cc(OC)c(C(C)C)cn2)C2CC2)[C@@H]1O
C27H44N4O5
504.672000
NVZGHXFOSFAGKS-LLHPUKMZSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM98685; PubChem:CID25141518
Local ready
Direct docking supported
E3L004388
BDB004388
BDBM98686
CCOC[C@@H](CC(C)C)NC(=O)[C@@H]1CNC[C@H](C(=O)N(c2cc(OCC)c(CC)cn2)C2CC2)[C@@H]1O
C27H44N4O5
504.672000
WHWGFMLDIJTFCO-XBZNOJLSSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM98686; PubChem:CID25141519
Local ready
Direct docking supported
E3L004389
BDB004389
BDBM98687
CCOC[C@@H](CC(C)C)NC(=O)[C@@H]1CNC[C@H](C(=O)N(CC(C)C)c2cc(OCCCO)c(C(C)C)cn2)[C@@H]1O
C30H52N4O6
564.768000
PAIMMCIYMXYNIS-KEHCTXMOSA-N P00797 Renin
BindingDB
BindingDB:BDBM98687
Local ready
Direct docking supported
E3L004390
BDB004390
BDBM98689
COC[C@H]1CC[C@H](NC(=O)[C@@H]2CNC[C@H](C(=O)N(c3cc(OC)c(C(C)C)cn3)C3CC3)[C@@H]2O)CC1
C27H42N4O5
502.656000
JUKBPBNCVSYTFC-OAUDRNOASA-N P00797 Renin
BindingDB
BindingDB:BDBM98689
Local ready
Direct docking supported
E3L004391
BDB004391
BDBM98690
CCOC[C@H](NC(=O)[C@@H]1CNC[C@H](C(=O)N(c2cc(OCC)c(CC)cn2)C2CC2)[C@@H]1O)C(C)C
C26H42N4O5
490.645000
DUBKNDHQCAWTRQ-MDAIXWLXSA-N P00797 Renin
BindingDB, PubChem
BindingDB:BDBM98690; PubChem:CID25141522
Local ready
Direct docking supported
E3L004392
BDB004392
Tak-632
N#Cc1c(Oc2ccc(F)c(NC(=O)Cc3cccc(C(F)(F)F)c3)c2)ccc2nc(NC(=O)C3CC3)sc12
C27H18F4N4O3S
554.525000
OJFKUJDRGJSAQB-UHFFFAOYSA-N Q13233 Mitogen-activated protein kinase kinase kinase 1
BindingDB, PubChem
BindingDB:BDBM99471; PubChem:CID46209401
Local ready
Direct docking supported
E3L004393
BDB004393
Harmine
COc1ccc2c(c1)[nH]c1c(C)nccc12
C13H12N2O
212.252000
BXNJHAXVSOCGBA-UHFFFAOYSA-N Q92630 Dual specificity tyrosine-phosphorylation-regulated kinase 2
BindingDB, PubChem
BindingDB:BDBM100152; PubChem:CID5280953
Local ready
Direct docking supported
E3L004394
BDB004394
US20250000854, Example 3
Cn1ncc(-c2ccc3c(=O)[nH]cc(CN)c3c2)c1-c1c(F)c(Cl)cc(OC2CC2)c1C#N
C24H19ClFN5O2
463.900000
UTESOWDSXZVOAN-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM100262; PubChem:CID170710967
Local ready
Direct docking supported
E3L004395
BDB004395
BDBM100263
C=Cc1cc(-c2cnn(C)c2-c2c(F)c(Cl)cc(OC3(C)CC3)c2C#N)cc2c(CN)n[nH]c(=O)c12
C26H22ClFN6O2
504.953000
FZDBDHNJIZVGMP-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM100263; PubChem:CID170710959
Local ready
Direct docking supported
E3L004396
BDB004396
PF-3758309
Cc1nc(Nc2[nH]nc3c2CN(C(=O)N[C@H](CN(C)C)c2ccccc2)C3(C)C)c2sccc2n1
C25H30N8OS
490.637000
AYCPARAPKDAOEN-LJQANCHMSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM101536; PubChem:CID25227462
Local ready
Direct docking supported
E3L004397
BDB004397
BDBM102888
COc1ccc2c(c1)C(=O)N(C[C@@]1(C#Cc3ccc(CC4(C)NC(=O)NC4=O)cc3)NC(=O)NC1=O)C2
C26H23N5O6
501.499000
RPIXUTROJMVGDZ-FXDYGKIASA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM102888; PubChem:CID58042138
Local ready
Direct docking supported
E3L004398
BDB004398
BDBM103555
C[C@@H](NC(=O)CCc1nc2ccccc2c(=O)[nH]1)c1ccccn1
C18H18N4O2
322.368000
HWTVYWVFOWWESR-GFCCVEGCSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM103555; PubChem:CID135566762
Local ready
Direct docking supported
E3L004399
BDB004399
BDBM103556
C[C@H](NC(=O)CCc1nc2ccccc2c(=O)[nH]1)c1ccccn1
C18H18N4O2
322.368000
HWTVYWVFOWWESR-LBPRGKRZSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM103556; PubChem:CID135566761
Local ready
Direct docking supported
E3L004400
BDB004400
BDBM103557
C[C@@H](NC(=O)CCc1nc2ccccc2c(=O)[nH]1)c1ccccc1
C19H19N3O2
321.380000
QIHBWVVVRYYYRO-CYBMUJFWSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM103557; PubChem:CID136229577
Local ready
Direct docking supported