E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
Reset
Structure similarity search Input SMILES or upload SDF/MOL/MOL2/PDB/PDBQT; results use Morgan fingerprint Tanimoto.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L062941
BDB062941
 BDBM50607597
O=C(Nc1ccc2[nH]ncc2n1)[C@H]1CCCN1C(=O)C1(c2ccc(F)cc2)CCC1
 C22H22FN5O2
407.449000		 ZLSIJSSCBSRUNF-GOSISDBHSA-N Q09472, Q92793 CREB-binding protein, Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM50607597; PubChem:CID168298107
 Local ready
Direct docking supported
E3L062942
BDB062942
 BDBM50607598
COc1ccc(C2(C(=O)N3CCC[C@@H]3C(=O)Nc3ccc4[nH]ncc4n3)CCC2)cc1
 C23H25N5O3
419.485000		 CBHJIVVYJHGWTJ-LJQANCHMSA-N Q09472, Q92793 CREB-binding protein, Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM50607598; PubChem:CID168299729
 Local ready
Direct docking supported
E3L062943
BDB062943
 BDBM50607599
N#Cc1ccc(C2(C(=O)N3CCC[C@@H]3C(=O)Nc3ccc4[nH]ncc4n3)CCC2)cc1
 C23H22N6O2
414.469000		 XABRYFHVZCVAPG-LJQANCHMSA-N Q09472, Q92793 CREB-binding protein, Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM50607599; PubChem:CID168299096
 Local ready
Direct docking supported
E3L062944
BDB062944
 BDBM50607600
O=C(Nc1ccc2[nH]ncc2n1)[C@H]1CCCN1C(=O)C1(c2ccc(Cl)cc2)CC(F)(F)C1
 C22H20ClF2N5O2
459.884000		 ZEXRVLSADZXFLV-QGZVFWFLSA-N Q09472, Q92793 Histone acetyltransferase p300, CREB-binding protein
BindingDB, PubChem
BindingDB:BDBM50607600; PubChem:CID168299352
 Local ready
Direct docking supported
E3L062945
BDB062945
 BDBM50607601
O=C(Nc1ccc2[nH]ncc2n1)[C@H]1C[C@@H](F)CN1C(=O)C1(c2ccc(Cl)cc2)CCC1
 C22H21ClFN5O2
441.894000		 OSDVXRQBLRRNJD-CRAIPNDOSA-N Q09472, Q92793 CREB-binding protein, Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM50607601; PubChem:CID168298342
 Local ready
Direct docking supported
E3L062946
BDB062946
 CBP/p300-IN-20
O=C(Nc1ccc2[nH]ncc2n1)[C@H]1C[C@@H](F)CN1C(=O)C1(c2ccc(Cl)cc2)CC(F)(F)C1
 C22H19ClF3N5O2
477.874000		 YWMDIJGVLFEWKQ-RHSMWYFYSA-N Q09472, Q92793 CREB-binding protein, Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM50607602; PubChem:CID167312228
 Local ready
Direct docking supported
E3L062947
BDB062947
 BDBM50607603
COc1ccc(NC(=O)CN(C)C(=O)C2(c3ccccc3)CCCC2)cc1
 C22H26N2O3
366.461000		 DKCHMKRLQSFONS-UHFFFAOYSA-N Q09472 Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM50607603; PubChem:CID4880035
 Local ready
Direct docking supported
E3L062948
BDB062948
 BDBM50607604
CNC(=O)c1cccc(CNC(=O)[C@H]2CCCN2C(=O)C2(c3ccc(Cl)cc3)CCCC2)c1
 C26H30ClN3O3
467.997000		 FKSCOWJURPRAGR-JOCHJYFZSA-N Q09472 Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM50607604; PubChem:CID165416302
 Local ready
Direct docking supported
E3L062949
BDB062949
 BDBM50607605
O=C(Nc1ccc2[nH]ncc2n1)[C@H]1COCCN1C(=O)C1(c2ccc(Cl)cc2)CC(F)(F)C1
 C22H20ClF2N5O3
475.883000		 QGGHNJHXFQDHHJ-QGZVFWFLSA-N Q09472, Q92793 CREB-binding protein, Histone acetyltransferase p300
BindingDB, PubChem
BindingDB:BDBM50607605; PubChem:CID168298435
 Local ready
Direct docking supported
E3L062950
BDB062950
 BDBM50607687
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CNC(=O)C[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C83H108N20O27S
1849.957000		 HZHCGBNORJHWNQ-XNFMMPRQSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607687
 Local ready
Direct docking supported
E3L062951
BDB062951
 BDBM50607688
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CNC(=O)CC[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C84H110N20O27S
1863.984000		 OWXLZXYNCAFGAK-ZGCVOUGASA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607688
 Local ready
Direct docking supported
E3L062952
BDB062952
 BDBM50607689
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CCNC(=O)C[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C84H110N20O27S
1863.984000		 HOZHRWQAIWSTIC-ZGCVOUGASA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607689
 Local ready
Direct docking supported
E3L062953
BDB062953
 BDBM50607690
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CCNC(=O)CC[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C85H112N20O27S
1878.011000		 RMYJWAPIAJYUOJ-RSGUKZORSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607690
 Local ready
Direct docking supported
E3L062954
BDB062954
 BDBM50607691
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CNC(=O)C[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C83H108N20O27S
1849.957000		 HZHCGBNORJHWNQ-WHFJXCMVSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607691
 Local ready
Direct docking supported
E3L062955
BDB062955
 BDBM50607692
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CNC(=O)CC[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C84H110N20O27S
1863.984000		 OWXLZXYNCAFGAK-ZEVGJPGMSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607692
 Local ready
Direct docking supported
E3L062956
BDB062956
 BDBM50607693
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CCNC(=O)C[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C84H110N20O27S
1863.984000		 HOZHRWQAIWSTIC-FHJXQBLUSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607693
 Local ready
Direct docking supported
E3L062957
BDB062957
 BDBM50607694
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CCNC(=O)CC[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C85H112N20O27S
1878.011000		 RMYJWAPIAJYUOJ-BHADAQERSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607694
 Local ready
Direct docking supported
E3L062958
BDB062958
 BDBM50607695
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1C/C=C/C[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C84H109N19O26S
1832.970000		 WSFYKSFWHIORJP-UDTIQPANSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607695
 Local ready
Direct docking supported
E3L062959
BDB062959
 BDBM50607696
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CCCC[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C84H111N19O26S
1834.986000		 NXOOQBFFDXRNCK-MURMVRIRSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607696
 Local ready
Direct docking supported
E3L062960
BDB062960
 BDBM50607697
CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CO)NC(=O)COCCOCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1C/C=C/C[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C84H109N19O26S
1832.970000		 WSFYKSFWHIORJP-RINHFHPNSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607697
 Local ready
Direct docking supported