E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
Reset
Structure similarity search Input SMILES or upload SDF/MOL/MOL2/PDB/PDBQT; results use Morgan fingerprint Tanimoto.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L062981
BDB062981
 BDBM50607718
CC(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccc(I)cc1)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(N)=O)C(C)C
 C70H83IN14O23S
1647.480000		 AHYSBNRBQNWZCU-DJRMSAAUSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607718
 Local ready
Direct docking supported
E3L062982
BDB062982
 BDBM50607719
CC(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccc(Cl)cc1)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(N)=O)C(C)C
 C70H83ClN14O23S
1556.029000		 KSRVXNRUJUMRGU-DJRMSAAUSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607719
 Local ready
Direct docking supported
E3L062983
BDB062983
 BDBM50607720
CC(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C(=O)O)C(=O)O)C(=O)N[C@@H](CCCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(N)=O)C(C)C
 C72H86N14O25S
1579.620000		 MAFMYPPPNOYMDY-NKVFZADDSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607720
 Local ready
Direct docking supported
E3L062984
BDB062984
 BDBM50607721
CC(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccc([N+](=O)[O-])cc1)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(N)=O)C(C)C
 C70H83N15O25S
1566.581000		 VPAIMLZIMXXQLG-DJRMSAAUSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607721
 Local ready
Direct docking supported
E3L062985
BDB062985
 BDBM50607722
CC(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccc(Cl)cc1)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C(=O)O)C(=O)O)C(=O)N[C@@H](CCCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(N)=O)C(C)C
 C72H85ClN14O25S
1614.065000		 OUZPMRXAYLUSAK-BBOAGKTOSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607722
 Local ready
Direct docking supported
E3L062986
BDB062986
 BDBM50607723
CC(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccc([N+](=O)[O-])cc1)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C(=O)O)C(=O)O)C(=O)N[C@@H](CCCCNC(=S)Nc1ccc2c(c1)C(=O)OC21c2ccc(O)cc2Oc2cc(O)ccc21)C(N)=O)C(C)C
 C72H85N15O27S
1624.617000		 PPCVBRNWOFRKFV-BBOAGKTOSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607723
 Local ready
Direct docking supported
E3L062987
BDB062987
 BDBM50607724
CC(=O)N[C@H](C(=O)N1CCC[C@@H]1C(=O)N[C@H]1CCCCC[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C(=O)O)C(=O)O)C(=O)N[C@@H](CCCCNC(=S)Nc2ccc3c(c2)C(=O)OC32c3ccc(O)cc3Oc3cc(O)ccc32)C(N)=O)NC(=O)[C@H](Cc2ccc([N+](=O)[O-])cc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C75H91N15O25S
1634.700000		 COKWWTMKYXNVKU-NMMUYIEDSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607724
 Local ready
Direct docking supported
E3L062988
BDB062988
 BDBM50607725
CC(=O)N[C@H]1CCCCC[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C(=O)O)C(=O)O)C(=O)N[C@@H](CCCCNC(=S)Nc2ccc3c(c2)C(=O)OC32c3ccc(O)cc3Oc3cc(O)ccc32)C(N)=O)NC(=O)[C@H](Cc2ccc([N+](=O)[O-])cc2)NC(=O)[C@H](CCC(N)=O)NC1=O
 C65H75N13O23S
1438.450000		 UWOYVOORLODMBE-SXGCRXOVSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607725
 Local ready
Direct docking supported
E3L062989
BDB062989
 BDBM50607726
CC(=O)N1CCC[C@H]1C(=O)N[C@H](C(=O)N[C@H]1CCCCC[C@@H](C(=O)N[C@@H](Cc2ccc([N+](=O)[O-])cc2)C(=O)N[C@@H](CC(C(=O)O)C(=O)O)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCCCNC(=S)Nc2ccc3c(c2)C(=O)OC32c3ccc(O)cc3Oc3cc(O)ccc32)C(N)=O)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](C)NC1=O)C(C)C
 C75H91N15O25S
1634.700000		 OOXOYMUHKMEWQJ-HFJZEDLMSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607726
 Local ready
Direct docking supported
E3L062990
BDB062990
 BDBM50607727
CC(=O)N[C@@H](CO)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H](C)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)C(C)C)C(C)C
 C58H89N17O21
1360.448000		 DHEJZWXHHIYNNK-TWTYIRLBSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50607727; PubChem:CID168298314
 Local ready
Direct docking supported
E3L062991
BDB062991
 BDBM50607728
CC(=O)N[C@@H](CO)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)C(C)C)C(C)C
 C56H87N17O19
1302.412000		 LJBXCYHPXVMSQO-OCYUVGEMSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50607728; PubChem:CID168298841
 Local ready
Direct docking supported
E3L062992
BDB062992
 BDBM50607729
CC(=O)N[C@@H](CO)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H](C)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)C(C)C)C(C)C
 C57H89N17O19
1316.439000		 OEGDDALGWUPNPV-IICYXNPTSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50607729; PubChem:CID168299867
 Local ready
Direct docking supported
E3L062993
BDB062993
 Ac-Ser-Arg-Val-Val-Pro-Gly-Gln-Phe-Asp-Asp-Ala-Asp-NH2
CC(=O)N[C@@H](CO)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)C(C)C)C(C)C
 C57H87N17O21
1346.421000		 QUFWKFRAPFXQON-ISEXULAQSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50607730; PubChem:CID168298743
 Local ready
Direct docking supported
E3L062994
BDB062994
 BDBM50607731
CC(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CCCCC[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C46H67N11O15
1014.104000		 OYZWCBHNXUMCPU-XTDTXPIQSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607731
 Local ready
Direct docking supported
E3L062995
BDB062995
 Ac-Val-Pro-Gly-Gln-Phe-Asp-Asp-Ala-Asp-NH2
CC(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(N)=O)C(C)C
 C43H61N11O17
1004.021000		 AXESGCAZRMAOJU-JETRBJTASA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM50607732; PubChem:CID168298386
 Local ready
Direct docking supported
E3L062996
BDB062996
 BDBM50607733
CC(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)N[C@H]1CCCCC[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C(=O)O)C(=O)O)C(N)=O)NC(=O)[C@H](Cc2ccc([N+](=O)[O-])cc2)NC(=O)[C@H](CCC(N)=O)NC1=O)C(C)C
 C48H68N12O19
1117.137000		 UWUBSFPMKFWHGU-SMLZLRLCSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB
BindingDB:BDBM50607733
 Local ready
Direct docking supported
E3L062997
BDB062997
 BDBM50607768
C[C@H]1C(=O)N(C)C=C(c2cnn(C)c2)c2cc([C@@H](O)CO)ccc21
 C18H21N3O3
327.384000		 CJVJSGBELMMESS-DIFFPNOSSA-N O15164 Transcription intermediary factor 1-alpha
BindingDB, PubChem
BindingDB:BDBM50607768; PubChem:CID165430663
 Local ready
Direct docking supported
E3L062998
BDB062998
 BDBM50607785
COc1cccc2ccc(-c3cc(-c4ccc5cccc(OC)c5c4O)c4cccc(OC)c4c3O)c(O)c12
 C33H26O6
518.565000		 QNSPJOAEPRYOBU-UHFFFAOYSA-N P37231, Q07869 Peroxisome proliferator-activated receptor alpha, Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50607785; PubChem:CID168298449
 Local ready
Direct docking supported
E3L062999
BDB062999
 Nodulisporin A
COc1cccc2ccc(-c3ccc(O)c4c(OC)cccc34)c(O)c12
 C22H18O4
346.382000		 ZEAFEAWABQVDLG-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50607786; PubChem:CID16080323
 Local ready
Direct docking supported
E3L063000
BDB063000
 BDBM50608074
CCC1=C(C)NC2=C(C#N)C(C)=CC2C1=O
 C13H14N2O
214.268000		 OACFJJZQWRYAJI-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50608074; PubChem:CID171342646
 Local ready
Direct docking supported