E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L063021
BDB063021
BDBM50609278
CCCCCCCN(C)Cc1ccc(-c2[nH]c3c(C#N)cnn3c(=O)c2C(C)C)cc1
C25H33N5O
419.573000
UKXVHLNXXTWGHG-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB
BindingDB:BDBM50609278
Local ready
Direct docking supported
E3L063022
BDB063022
BDBM50609279
CN(C)C/C=C/C(=O)Nc1cccc(C(OCCN2CCCCC2)c2cc3nccc(C(=O)O)c3[nH]2)c1
C28H35N5O4
505.619000
PATSJMHSNAENAO-JXMROGBWSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50609279; PubChem:CID171354794
Local ready
Direct docking supported
E3L063023
BDB063023
BDBM50609280
CC(C)OC(=O)c1ccnc2cc(C(OCCN3CCCCC3)c3cccc(NC(=O)/C=C/CN(C)C)c3)[nH]c12
C31H41N5O4
547.700000
MQPYAXPCLQILKZ-FMIVXFBMSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50609280; PubChem:CID171352421
Local ready
Direct docking supported
E3L063024
BDB063024
BDBM50609281
CCN(CCN(C)C)C(=O)CNCc1cc(C(=O)Oc2ccc(OC(C)C)cc2OC(C)C)ccn1
C27H40N4O5
500.640000
APYABXFXNNTCQD-UHFFFAOYSA-N P29375, P41229 Lysine-specific demethylase 5A, Lysine-specific demethylase 5C
BindingDB, PubChem
BindingDB:BDBM50609281; PubChem:CID146374976
Local ready
Direct docking supported
E3L063025
BDB063025
BDBM50609282
COCC(=O)CCNc1cc(N2CCc3ccccc3CC2)nc(-c2ccccn2)n1
C24H27N5O2
417.513000
BXYDJVPUNRVZON-UHFFFAOYSA-N P41229 Lysine-specific demethylase 5C
BindingDB, PubChem
BindingDB:BDBM50609282; PubChem:CID171352567
Local ready
Direct docking supported
E3L063026
BDB063026
6-Methyl-2-(4-methylphenyl)imidazo(1,2-a)pyridine
Cc1ccc(-c2cn3cc(C)ccc3n2)cc1
C15H14N2
222.291000
AWEWSJJCANQFRB-UHFFFAOYSA-N P29375, P41229 Lysine-specific demethylase 5C, Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50609283; PubChem:CID667720
Local ready
Direct docking supported
E3L063027
BDB063027
BDBM50609284
C=C/C(O[C@H](C)C(=O)NCC(=O)NCC(=O)O)=c1/c2c(c(=O)oc1=C)CCC2
C19H22N2O7
390.392000
FCSFQXYKHFZUTC-YOEHMKRZSA-N P29375, P41229 Lysine-specific demethylase 5A, Lysine-specific demethylase 5C
BindingDB, PubChem
BindingDB:BDBM50609284; PubChem:CID171346285
Local ready
Direct docking supported
E3L063028
BDB063028
BDBM50609285
CCCCC1Oc2ccccc2C1C(=O)c1cc(I)c(OCCC[N+](C)(C)C)c(I)c1
C25H32I2NO3+
648.343000
LQXRCKBTNAXXHU-UHFFFAOYSA-N P29375, Q9H160 Inhibitor of growth protein 2, Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50609285; PubChem:CID171347710
Local ready
Direct docking supported
E3L063029
BDB063029
BDBM50609286
CCCCC1Oc2ccccc2C1C(=O)c1cc(I)c(OCCCC[N+](C)(C)C)c(I)c1
C26H34I2NO3+
662.370000
UKQKJUSVAXXPCW-UHFFFAOYSA-N P29375 Lysine-specific demethylase 5A
BindingDB, PubChem
BindingDB:BDBM50609286; PubChem:CID171350915
Local ready
Direct docking supported
E3L063030
BDB063030
BDBM50609343
[2H]C([2H])(Nc1ncc(-c2cccnc2C)c(=O)[nH]1)c1c(F)ccc2c1CCO2
C19H17FN4O2
354.381204
JDPYJBMTKJVOKT-KNXIQCGSSA-N O75530 Polycomb protein EED
BindingDB, PubChem
BindingDB:BDBM50609343; PubChem:CID171342399
Local ready
Direct docking supported
E3L063031
BDB063031
BDBM50609344
Cc1cc(C)n(-c2cc(N3CCCc4ccccc43)ccc2[N+](=O)[O-])n1
C20H20N4O2
348.406000
IBBXGBXXNJYGSZ-UHFFFAOYSA-N O75530 Polycomb protein EED
BindingDB, PubChem
BindingDB:BDBM50609344; PubChem:CID171346565
Local ready
Direct docking supported
E3L063032
BDB063032
BDBM50609345
CC[C@H](C)C1NC(=O)[C@H](CCCCN)NC(=O)[C@@](C)(NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CO)NC(=O)[C@H](CO)NC(=O)[C@H](Cc2ccccc2)NC(C)=O)CCC/C=C/CCC[C@@](C)(C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](Cc2c[nH]c3ccccc23)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N2CCC[C@H]2C(=O)N[C@H](C(=O)O)C(C)C)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)NC(=O)[C@H](CC(C)C)NC1=O
C155H256N48O40
3432.049000
SYHNQEAAZWGLKW-JGNINCOKSA-N O75530 Polycomb protein EED
BindingDB
BindingDB:BDBM50609345
Local ready
Direct docking supported
E3L063033
BDB063033
BDBM50609393
COc1cc2c(cc1OC)C(=O)/C(=C/c1ccccc1OCCc1cccs1)C2
C24H22O4S
406.503000
NALIFVUCAGHUQG-LDADJPATSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50609393; PubChem:CID171344232
Local ready
Direct docking supported
E3L063034
BDB063034
BDBM50609394
COC(=O)c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)CC(C)(C)C)cc1
C20H28N2O5
376.453000
LUXKEEIMLQRZAH-CVEARBPZSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM50609394; PubChem:CID168317737
Local ready
Direct docking supported
E3L063035
BDB063035
BDBM50609429
COc1cc(Nc2ncc3c(n2)-c2ccc(Cl)cc2C(c2c(F)cccc2OC)=NC3)ccc1C(=O)NCCOCCOCCNC(=O)COc1cccc2c1C(=O)N(C1CCC(=O)NC1=O)C2=O
C48H44ClFN8O11
963.376000
GYKNPXCQINZRLL-UHFFFAOYSA-N O14965 Aurora kinase A
BindingDB
BindingDB:BDBM50609429
Local ready
Direct docking supported
E3L063036
BDB063036
BDBM50609593
Cc1c(C)n(Cc2ccc(C(C)(C)C(=O)O)cc2)c2ccc(C(=O)N[C@@H](C)c3cccc(C4CC4)c3)cc12
C33H36N2O3
508.662000
DVWSHWWLAFDNHD-NRFANRHFSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB, PubChem
BindingDB:BDBM50609593; PubChem:CID71478927
Local ready
Direct docking supported
E3L063037
BDB063037
BDBM50609912
O=C1CN(Cc2cn(-c3ccccc3F)nn2)C2(CCCCC2)c2ccccc21
C23H23FN4O
390.462000
UYZZDYYJQBZWAP-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM50609912; PubChem:CID171351208
Local ready
Direct docking supported
E3L063038
BDB063038
BDBM50609913
O=C1CCc2cc(-c3ccccc3F)ccc2C2(CCCCC2)N1
C21H22FNO
323.411000
FUUOPLKUAWRLLD-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM50609913; PubChem:CID171357215
Local ready
Direct docking supported
E3L063039
BDB063039
BDBM50609914
Cc1nnc2n1N=C(c1ccccc1OCCNCCCNCCOc1ccccc1C1=Nn3c(C)nnc3SC1)CS2
C29H34N10O2S2
618.793000
POVQQXDQCONOIG-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM50609914; PubChem:CID171355114
Local ready
Direct docking supported
E3L063040
BDB063040
BDBM50609915
CC(c1nc2cccc(C(N)=O)c2[nH]1)N1CC(=O)N(c2cccc(C(F)(F)F)c2)C1=S
C20H16F3N5O2S
447.442000
TUDSHWAWWDYCMO-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM50609915; PubChem:CID171356308
Local ready
Direct docking supported