E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L022601
BDB022601
BDBM525703
C[C@@H]1CN(c2ccc(-c3cc(C(N)=O)c(F)cc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C27H26F5N5O3
563.527000
DGFHHFXOZVNTQT-OKILXGFUSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525703; PubChem:CID138558066
Local ready
Direct docking supported
E3L022602
BDB022602
BDBM525704
C[C@@H]1CN(c2ccc(-c3ccc(C(=O)NC(C)(C)CC(C)(C)C)c(F)c3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C35H42F5N5O3
675.743000
LFHCXAGTQPSZQN-BGYRXZFFSA-N P61964 WD repeat-containing protein 5
BindingDB
BindingDB:BDBM525704
Local ready
Direct docking supported
E3L022603
BDB022603
BDBM525705
C[C@@H]1CN(c2ccc(-c3ccc(C(N)=O)c(F)c3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C27H26F5N5O3
563.527000
JZMTWRYLUQXTLI-OKILXGFUSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525705; PubChem:CID138558113
Local ready
Direct docking supported
E3L022604
BDB022604
BDBM525706
CC1CN(c2ccc(-c3cc(C(=O)NC4CCCCC4)ccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC(C)N1C
C33H37F4N5O3
627.683000
YFITWOOGOWMDIU-UHFFFAOYSA-N P61964, Q03164, Q15291 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525706; PubChem:CID137376373
Local ready
Direct docking supported
E3L022605
BDB022605
US11174250, Example 125
C[C@@H]1CN(c2ccc(-c3nc(N4CCOCC4)ncc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C28H31F4N7O3
589.594000
ABZPYVVLYOUCEV-CALCHBBNSA-N P61964, Q03164, Q15291 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525707; PubChem:CID137376401
Local ready
Direct docking supported
E3L022606
BDB022606
BDBM526531
C=CC(=O)N1CCCC(C(=O)Nc2cccc(CNc3nc(NC4CCOCC4)nc4c(C(C)C)cnn34)c2)C1
C29H38N8O3
546.676000
RCPRNUMVRKHPTG-UHFFFAOYSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526531; PubChem:CID122517713
Local ready
Direct docking supported
E3L022607
BDB022607
BDBM526532
C=CC(=O)N1CCC1C(=O)Nc1cccc(CNc2nc(NC3CCOCC3)nc3c(C(C)C)cnn23)c1
C27H34N8O3
518.622000
JVAPFLBAEURREJ-UHFFFAOYSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526532; PubChem:CID122536931
Local ready
Direct docking supported
E3L022608
BDB022608
BDBM526533
C=CC(=O)N1CCCC1C(=O)Nc1cccc(CNc2nc(NC3CCOCC3)nc3c(C(C)C)cnn23)c1
C28H36N8O3
532.649000
CQGSKPPSPMWAPE-UHFFFAOYSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526533; PubChem:CID134281404
Local ready
Direct docking supported
E3L022609
BDB022609
BDBM526534
C=CC(=O)N1CCC(C(=O)Nc2cccc(CNc3nc(NC4CCOCC4)nc4c(C(C)C)cnn34)c2)C1
C28H36N8O3
532.649000
GPDBJFPOOGCXPZ-UHFFFAOYSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526534; PubChem:CID122537010
Local ready
Direct docking supported
E3L022610
BDB022610
BDBM526537
C=CC(=O)N[C@H]1CC[C@@H](C(=O)Nc2cccc(CNc3nc(NC4CCOCC4)nc4c(C(C)C)cnn34)c2)CC1
C30H40N8O3
560.703000
AXSJQCHFTUTOCQ-SZPZYZBQSA-N P51948 Cyclin-H
BindingDB
BindingDB:BDBM526537
Local ready
Direct docking supported
E3L022611
BDB022611
BDBM526538
C=CC(=O)N1CCCC(C(=O)Nc2cccc(CNc3nc(NC4CCN(C)CC4)nc4c(C(C)C)cnn34)c2)C1
C30H41N9O2
559.719000
HMAVGSMOAUBMJF-UHFFFAOYSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526538; PubChem:CID134281395
Local ready
Direct docking supported
E3L022612
BDB022612
BDBM526539
C=CC(=O)N[C@H]1CC[C@@H](C(=O)Nc2cccc(CNc3nc(N[C@H]4CC[C@H](O)CC4)nc4c(C(C)C)cnn34)c2)CC1
C31H42N8O3
574.730000
ONEXNQKMGKVENG-TWMYTPEGSA-N P51948 Cyclin-H
BindingDB
BindingDB:BDBM526539
Local ready
Direct docking supported
E3L022613
BDB022613
BDBM526540
C=CC(=O)N[C@H]1CC[C@@H](C(=O)Nc2cccc(CNc3nc(NC4CCCC(O)C4)nc4c(C(C)C)cnn34)c2)CC1
C31H42N8O3
574.730000
XVCFTTIVYZTNOY-QHSWPGFUSA-N P51948 Cyclin-H
BindingDB
BindingDB:BDBM526540
Local ready
Direct docking supported
E3L022614
BDB022614
BDBM526541
C=CC(=O)N[C@H]1CC[C@H](C(=O)Nc2cccc(CNc3nc(NC4CCCC(O)C4)nc4c(C(C)C)cnn34)c2)CC1
C31H42N8O3
574.730000
XVCFTTIVYZTNOY-BXRLGOFVSA-N P51948 Cyclin-H
BindingDB
BindingDB:BDBM526541
Local ready
Direct docking supported
E3L022615
BDB022615
BDBM526542
C=CC(=O)N1CCC(C(=O)Nc2cccc(CNc3nc(N[C@H]4CCC[C@@H](O)C4)nc4c(C(C)C)cnn34)c2)C1
C29H38N8O3
546.676000
MPRGZJIDIZHMNQ-XGELLPRESA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526542; PubChem:CID163199942
Local ready
Direct docking supported
E3L022616
BDB022616
BDBM526543
C=CC(=O)N1CCC(C(=O)Nc2cccc(CNc3nc(N[C@H]4CCC[C@H](O)C4)nc4c(C(C)C)cnn34)c2)C1
C29H38N8O3
546.676000
MPRGZJIDIZHMNQ-FALYVICWSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526543; PubChem:CID163199943
Local ready
Direct docking supported
E3L022617
BDB022617
BDBM526544
C=CC(=O)N1CCC(C(=O)Nc2cccc(CNc3nc(N[C@@H]4CCNC[C@H]4F)nc4c(C(C)C)cnn34)c2)C1
C28H36FN9O2
549.655000
KGHZKXNQBOKOPW-QENMJEOYSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526544; PubChem:CID122536937
Local ready
Direct docking supported
E3L022618
BDB022618
BDBM526545
C=CC(=O)N1CCC(C(=O)Nc2cccc(CNc3nc(NC4CCCC(N)C4)nc4c(C(C)C)cnn34)c2)C1
C29H39N9O2
545.692000
ADWXJDLAQHGNIE-UHFFFAOYSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526545; PubChem:CID134281393
Local ready
Direct docking supported
E3L022619
BDB022619
BDBM526546
C=CC(=O)N1CCCCC1C(=O)Nc1cccc(CNc2nc(N[C@H]3CCCOC3)nc3c(C(C)C)cnn23)c1
C29H38N8O3
546.676000
JIVCYBOEYULWCW-OWJIYDKWSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526546; PubChem:CID122517761
Local ready
Direct docking supported
E3L022620
BDB022620
BDBM526547
CC(C)=CC(=O)N1CCC1C(=O)Nc1cccc(CNc2nc(NC3CCOCC3)nc3c(C(C)C)cnn23)c1
C29H38N8O3
546.676000
HVOCJQXJUFXWCM-UHFFFAOYSA-N P51948 Cyclin-H
BindingDB, PubChem
BindingDB:BDBM526547; PubChem:CID122517860
Local ready
Direct docking supported