E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L022561
BDB022561
BDBM525660
C[C@@H]1CN(c2ccc(-c3c(F)ccc(C#N)c3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C27H24F5N5O2
545.512000
DKVQFFPGQHRJEL-GASCZTMLSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525660; PubChem:CID137376535
Local ready
Direct docking supported
E3L022562
BDB022562
BDBM525661
C[C@@H]1CN(c2ccc(-c3cc(CNC4CCCCC4)c(F)cc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C33H38F5N5O2
631.690000
MNVVEWJMRBOLGO-BGYRXZFFSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525661; PubChem:CID137376411
Local ready
Direct docking supported
E3L022563
BDB022563
BDBM525662
CN1CCN(c2ccc(-c3cc(C(=O)NC4CCCCC4)ccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1=O
C31H31F4N5O4
613.612000
AJEAVPDKUNNESV-UHFFFAOYSA-N P61964, Q03164, Q15291 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525662; PubChem:CID138558057
Local ready
Direct docking supported
E3L022564
BDB022564
BDBM525663
CC1CN(c2ccc(-c3cc(C(=O)NC4CCCCC4)ccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C
C32H35F4N5O3
613.656000
VXGCJYUYWWUXJH-UHFFFAOYSA-N P61964, Q03164, Q15291 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525663; PubChem:CID137376417
Local ready
Direct docking supported
E3L022565
BDB022565
BDBM525664
C[C@@H]1CN(c2ccc(-c3ccc(OCC4CC4)nc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C29H31F4N5O3
573.591000
CLIGIUJNVZBOLZ-CALCHBBNSA-N P61964, Q03164, Q15291 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM525664; PubChem:CID137376477
Local ready
Direct docking supported
E3L022566
BDB022566
BDBM525665
C[C@@H]1CN(c2ccc(-c3ccc(F)c(CNC4CCCCC4)c3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C33H38F5N5O2
631.690000
KJAOKRDAZACUNM-BGYRXZFFSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525665; PubChem:CID137376416
Local ready
Direct docking supported
E3L022567
BDB022567
BDBM525666
CN1CCN(c2ncc(-c3cc(CN4CCOCC4)ccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C28H30F4N6O3
574.579000
UOZGJWWPIWCEJI-UHFFFAOYSA-N P61964, Q03164, Q15291 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525666; PubChem:CID138558095
Local ready
Direct docking supported
E3L022568
BDB022568
BDBM525667
CN1CCN(c2ncc(-c3cc(CNC4CCCCC4)ccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C30H34F4N6O2
586.634000
KMZWIGDLQWYHNE-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525667; PubChem:CID137376480
Local ready
Direct docking supported
E3L022569
BDB022569
BDBM525669
CN(C)C1CCN(c2ccc(-c3cc(CN4CCOCC4)ccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C1
C30H33F4N5O3
587.618000
REFBTSPNEOVMBZ-UHFFFAOYSA-N P61964, Q03164, Q15291 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM525669; PubChem:CID138558047
Local ready
Direct docking supported
E3L022570
BDB022570
BDBM525670
CN1CCCN(c2ccc(-c3cc(CN4CCOCC4)ccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C30H33F4N5O3
587.618000
HUNQCTSTGWMXHS-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525670; PubChem:CID137377214
Local ready
Direct docking supported
E3L022571
BDB022571
US11174250, Example 89
CN1CCCN(c2ccc(-c3cc(CN4CCOCC4)ccc3F)cc2NC(=O)c2cn(C)c(=O)cc2C(F)(F)F)CC1
C31H35F4N5O3
601.645000
XYQKOKXWCZHAJW-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525671; PubChem:CID137377325
Local ready
Direct docking supported
E3L022572
BDB022572
BDBM525672
CNC(=O)c1ccc(F)c(-c2ccc(N3C[C@@H](C)N(C)[C@@H](C)C3)c(NC(=O)c3c[nH]c(=O)cc3C(F)(F)F)c2)c1
C28H29F4N5O3
559.564000
IAZCPSRSJSAWDY-IYBDPMFKSA-N P61964, Q03164, Q15291 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM525672; PubChem:CID138558059
Local ready
Direct docking supported
E3L022573
BDB022573
US11174250, Example 91
Cc1cc(C(=O)Nc2cc(-c3cc(CN4CCOCC4)ccc3F)ccc2N2CCC(N(C)C)C2)cc(C)c1F
C32H38F2N4O2
548.678000
SMKWFQLMCHIGQB-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525673; PubChem:CID138558107
Local ready
Direct docking supported
E3L022574
BDB022574
US11174250, Example 92
Cc1cc(C(=O)Nc2cc(-c3cc(CN4CCOCC4)ccc3F)ccc2N2CCCN(C)CC2)cc(C)c1F
C32H38F2N4O2
548.678000
GHKWSNRRDKKPLQ-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525674; PubChem:CID137376507
Local ready
Direct docking supported
E3L022575
BDB022575
BDBM525675
C[C@@H]1CN(c2ccc(-c3cc(C(=O)NC4CC4)ccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C30H31F4N5O3
585.602000
JWPMQFAQNDYLNU-CALCHBBNSA-N P61964, Q03164, Q15291 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525675; PubChem:CID137376706
Local ready
Direct docking supported
E3L022576
BDB022576
US11174250, Example 94
Cc1cc(C(=O)Nc2cc(-c3cc(CN4CCOCC4)ccc3F)ccc2N2CC3CN(C)CC3C2)cc(C)c1F
C33H38F2N4O2
560.689000
FPFQFUXPTOREAD-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525676; PubChem:CID138558079
Local ready
Direct docking supported
E3L022577
BDB022577
US11174250, Example 95
Cc1cc(C(=O)Nc2cc(-c3cc(CN4CCOCC4)ccc3F)ccc2N2CCN(CC(F)(F)F)CC2)cc(C)c1F
C32H35F5N4O2
602.648000
DHCLLDQUEBPRCB-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525677; PubChem:CID137376420
Local ready
Direct docking supported
E3L022578
BDB022578
US11174250, Example 96
C[C@H]1CN(c2ccc(-c3ncccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C
C24H23F4N5O2
489.473000
CNQJAZWPIYTABC-AWEZNQCLSA-N P61964, Q03164, Q15291 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525678; PubChem:CID137376461
Local ready
Direct docking supported
E3L022579
BDB022579
BDBM525679
O=C(Nc1cc(-c2cc(CN3CCOCC3)ccc2F)ccc1N1CCN(CC(F)(F)F)CC1)c1c[nH]c(=O)cc1C(F)(F)F
C30H30F7N5O3
641.588000
VUXNDTHYMVUCTO-UHFFFAOYSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525679; PubChem:CID138558043
Local ready
Direct docking supported
E3L022580
BDB022580
BDBM525680
CN1CCN(c2c(F)cc(-c3cc(CN4CCOCC4)ccc3F)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C29H30F5N5O3
591.581000
FNMIGKXNLZEIGZ-UHFFFAOYSA-N P61964, Q03164, Q15291 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM525680; PubChem:CID138558061
Local ready
Direct docking supported