E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L036041
BDB036041
BDBM723439
C[C@@H]1CN(Cc2cc3c(c(C(F)(F)F)c2)CN(c2cccc(C4(c5nncn5C)CC(F)(F)C4)c2)C3=O)CCC1(F)F
C29H28F7N5O
595.563000
DFNWJTUIQFBTMS-QGZVFWFLSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM723439; PubChem:CID155435235
Local ready
Direct docking supported
E3L036042
BDB036042
BDBM723440
C[C@@H]1CN(Cc2cc3c(c(C(F)(F)F)c2)CN(c2cccc(C4(c5nncn5C)CC(F)(F)C4)c2)C3=O)CCO1
C28H28F5N5O2
561.555000
PVNFFOKNMXGQRR-QGZVFWFLSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM723440; PubChem:CID155449909
Local ready
Direct docking supported
E3L036043
BDB036043
US11091495, Example 32
CN(C)C(=O)c1cc(F)c(-c2cnc(NCc3c(F)ccc4c3CCO4)n3cc(C#N)nc23)cc1F
C25H19F3N6O2
492.461000
WTANIBLXUWSPSF-UHFFFAOYSA-N O75530, Q09028 Histone-lysine N-methyltransferase EZH2
BindingDB, PubChem
BindingDB:BDBM725157; PubChem:CID155788080
Local ready
Direct docking supported
E3L036044
BDB036044
US20250073340, Example 7
COc1cc(C(N)=O)ccc1NC(=O)[C@]1(C)N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C32H35Cl2FN4O3
613.561000
WBJKKMNFNMNHSH-HIUNOHRZSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725161; PubChem:CID164591977
Local ready
Direct docking supported
E3L036045
BDB036045
US20250073340, Example 8
COc1cc(C(N)=O)ccc1NC(=O)[C@@]1(C)N[C@H](CC(C)(C)C)[C@]2(CNc3cc(Cl)ccc32)[C@@H]1c1cccc(Cl)c1F
C32H35Cl2FN4O3
613.561000
WBJKKMNFNMNHSH-BSKGKCTDSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725162; PubChem:CID164591798
Local ready
Direct docking supported
E3L036046
BDB036046
US20250073340, Example 9
COc1cc(C(N)=O)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ncc32)[C@H]1c1cccc(Cl)c1F
C30H32Cl2FN5O3
600.522000
PKLNTJBSCSSFND-SYRFEWCISA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725163; PubChem:CID164591840
Local ready
Direct docking supported
E3L036047
BDB036047
US20250073340, Example 10
COc1cc(C(N)=O)ccc1NC(=O)[C@H]1N[C@H](CC(C)(C)C)[C@]2(CNc3cc(Cl)ncc32)[C@@H]1c1cccc(Cl)c1F
C30H32Cl2FN5O3
600.522000
PKLNTJBSCSSFND-CULBQNCQSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725164; PubChem:CID176227881
Local ready
Direct docking supported
E3L036048
BDB036048
US20250073340, Example 11
COc1cc(C(N)=O)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(C(F)(F)F)ncc32)[C@H]1c1cccc(Cl)c1F
C31H32ClF4N5O3
634.074000
IQIZIUSEZUPIDM-FQFMIMTMSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725165; PubChem:CID164591864
Local ready
Direct docking supported
E3L036049
BDB036049
US20250073340, Example 12
COc1cc(C(N)=O)ccc1NC(=O)[C@H]1N[C@H](CC(C)(C)C)[C@]2(CNc3cc(C(F)(F)F)ncc32)[C@@H]1c1cccc(Cl)c1F
C31H32ClF4N5O3
634.074000
IQIZIUSEZUPIDM-AGSHNOCLSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725166; PubChem:CID164591815
Local ready
Direct docking supported
E3L036050
BDB036050
US20250073340, Example 14
CC(C)(C)C[C@@H]1N[C@@H](C(=O)N2CCOc3cc(C(N)=O)ccc32)[C@H](c2cccc(Cl)c2F)[C@]12CNc1cc(Cl)ccc12
C32H33Cl2FN4O3
611.545000
IQUGDBQAOOBUAJ-ULWUHOHFSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725167; PubChem:CID164591852
Local ready
Direct docking supported
E3L036051
BDB036051
US20250073340, Example 15
CC(C)(C)C[C@H]1N[C@H](C(=O)N2CCOc3cc(C(N)=O)ccc32)[C@@H](c2cccc(Cl)c2F)[C@@]12CNc1cc(Cl)ccc12
C32H33Cl2FN4O3
611.545000
IQUGDBQAOOBUAJ-LJZFYEOISA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725168; PubChem:CID164591950
Local ready
Direct docking supported
E3L036052
BDB036052
US20250073340, Example 16
COc1cc(C(=O)NCCCC#Cc2cccc3c2CN(C2CCC(=O)NC2=O)C3=O)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C49H49Cl2FN6O6
907.871000
DNPMZTHJIAHDFY-KBQGJOFZSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725169; PubChem:CID164592146
Local ready
Direct docking supported
E3L036053
BDB036053
US20250073340, Example 17
COc1cc(C(=O)NCCCC#Cc2cccc3c2CN([C@@H]2CCC(=O)NC2=O)C3=O)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C49H49Cl2FN6O6
907.871000
DNPMZTHJIAHDFY-OKGXSHBPSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725170; PubChem:CID164592141
Local ready
Direct docking supported
E3L036054
BDB036054
US20250073340, Example 18
COc1cc(C(=O)NCCCC#Cc2cccc3c2CN([C@H]2CCC(=O)NC2=O)C3=O)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C49H49Cl2FN6O6
907.871000
DNPMZTHJIAHDFY-AMEOJRGXSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725171; PubChem:CID164592007
Local ready
Direct docking supported
E3L036055
BDB036055
US20250073340, Example 19
COc1cc(C(=O)NCCCC#Cc2cccc3c2CN(C2CCC(=O)N(C)C2=O)C3=O)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C50H51Cl2FN6O6
921.898000
UMLJESWHOOXVDD-SQHSVADMSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725172; PubChem:CID164592058
Local ready
Direct docking supported
E3L036056
BDB036056
US20250073340, Example 20
COc1cc(C(=O)N2CCC(C#Cc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)CC2)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C51H51Cl2FN6O6
933.909000
ZOOZRFOSYFZGBP-JRDHYNAESA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725173; PubChem:CID164592071
Local ready
Direct docking supported
E3L036057
BDB036057
US20250073340, Example 21
COc1cc(C(=O)NC23CC(C#Cc4cccc5c4CN(C4CCC(=O)NC4=O)C5=O)(C2)C3)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C51H49Cl2FN6O6
931.893000
HOGCVPJHSJSMKA-MVQOGPFJSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725174; PubChem:CID164592054
Local ready
Direct docking supported
E3L036058
BDB036058
US20250073340, Example 22
COc1cc(N2CCC3(CC2)CC([C@@H]2C[C@H]2C#Cc2cccc4c2CN(C2CCC(=O)NC2=O)C4=O)C3)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C56H59Cl2FN6O5
986.029000
IMHSPCKBQXBAHB-DWMJOQDYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725175; PubChem:CID164591835
Local ready
Direct docking supported
E3L036059
BDB036059
US20250073340, Example 23
COc1cc(N2CCC3(CC2)CC([C@H]2C[C@@H]2C#Cc2cccc4c2CN(C2CCC(=O)NC2=O)C4=O)C3)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C56H59Cl2FN6O5
986.029000
IMHSPCKBQXBAHB-GUVGVTSASA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725176; PubChem:CID164592095
Local ready
Direct docking supported
E3L036060
BDB036060
US20250073340, Example 24
COc1cc(C(=O)N2CCC[C@H](CC#Cc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)C2)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C52H53Cl2FN6O6
947.936000
BZUIBNLKEGFPOY-PCSFOWHGSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725177; PubChem:CID164592138
Local ready
Direct docking supported