E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L036081
BDB036081
US20250073340, Example 50
COc1cc(C(=O)N[C@@H]2CCCN(CC#Cc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)C2)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C52H54Cl2FN7O6
962.951000
VVYBZQKIOPKPSI-HFZSCNJRSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725198; PubChem:CID164591951
Local ready
Direct docking supported
E3L036082
BDB036082
US20250073340, Example 51
COc1cc(C(=O)N2CCN(CC#Cc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)CC2)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C51H52Cl2FN7O6
948.924000
GKGOMOOXBDJKRR-JRDHYNAESA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725199; PubChem:CID164591918
Local ready
Direct docking supported
E3L036083
BDB036083
US20250073340, Example 52
COc1cc(C(=O)N[C@H]2CCCN(CC#Cc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)C2)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C52H54Cl2FN7O6
962.951000
VVYBZQKIOPKPSI-SEWIRMETSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725200; PubChem:CID164591868
Local ready
Direct docking supported
E3L036084
BDB036084
US20250073340, Example 56
COc1cc(C(=O)N2CCC3(CC2)C[C@@H]3C#Cc2cccc3c2CN([C@H]2CCC(=O)NC2=O)C3=O)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(C(F)(F)F)ncc32)[C@H]1c1cccc(Cl)c1F
C53H52ClF4N7O6
994.487000
ATUTWMIBPYSOCC-QEJSDOCLSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725201; PubChem:CID164591834
Local ready
Direct docking supported
E3L036085
BDB036085
US20250073340, Example 58
COc1cc(C(=O)N2CCC3(CC2)C[C@@H]3C#Cc2cccc3c2CN([C@H]2CCC(=O)NC2=O)C3=O)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
C53H53Cl2FN6O6
959.947000
OAFXZDOTHLLNQB-YTLRALJPSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM725202; PubChem:CID164591889
Local ready
Direct docking supported
E3L036086
BDB036086
WO2017214367, Example 64
CC(C)c1ncncc1-c1cc(F)ccc1Oc1cncnc1N1CC2(CN(CC3CCC4(CC3)OCCO4)C2)C1
C31H37FN6O3
560.674000
PFXYDBYVJDWJFS-UHFFFAOYSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725692; PubChem:CID132212720
Local ready
Direct docking supported
E3L036087
BDB036087
BDBM725693
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CCC(=O)N4)CC3)CC2)C1)C(C)C
C33H45FN6O3
592.760000
WVJIDSZQVNZMDQ-KFUJTCAESA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725693
Local ready
Direct docking supported
E3L036088
BDB036088
US20250074910, Example 3
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(CC3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H48FN5O3
617.810000
AJJCPMFCGDDIHE-UHFFFAOYSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725694; PubChem:CID176456268
Local ready
Direct docking supported
E3L036089
BDB036089
US20250074910, Example 3-1
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H48FN5O3
617.810000
AJJCPMFCGDDIHE-TZNMGBFISA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725695; PubChem:CID176456269
Local ready
Direct docking supported
E3L036090
BDB036090
US20250074910, Example 3-2
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H48FN5O3
617.810000
AJJCPMFCGDDIHE-AIXKKLOWSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725696; PubChem:CID176456270
Local ready
Direct docking supported
E3L036091
BDB036091
US20250074910, Example 3
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(CC3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H48FN5O3
617.810000
AJJCPMFCGDDIHE-UHFFFAOYSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725697; PubChem:CID176456268
Local ready
Direct docking supported
E3L036092
BDB036092
US20250074910, Example 3-1
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H48FN5O3
617.810000
AJJCPMFCGDDIHE-TZNMGBFISA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725698; PubChem:CID176456269
Local ready
Direct docking supported
E3L036093
BDB036093
US20250074910, Example 3-2
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H48FN5O3
617.810000
AJJCPMFCGDDIHE-AIXKKLOWSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725699; PubChem:CID176456270
Local ready
Direct docking supported
E3L036094
BDB036094
US20250074910, Example 3
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(CC3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H48FN5O3
617.810000
AJJCPMFCGDDIHE-UHFFFAOYSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725700; PubChem:CID176456268
Local ready
Direct docking supported
E3L036095
BDB036095
BDBM725701
CCN(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CCC(=O)N4)CC3)CC2)C1)C(C)C
C32H44FN7O3
593.748000
AUDXQAHMNARUAA-FVQXVRMNSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725701
Local ready
Direct docking supported
E3L036096
BDB036096
BDBM725702
CC(C)N(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CCC(=O)C4)CC3)CC2)C1)C(C)C
C34H47FN6O3
606.787000
ZYYSPKAHPAXVSG-PIPLUPRYSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725702
Local ready
Direct docking supported
E3L036097
BDB036097
BDBM725703
CC(C)N(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CCC(=O)C4)CC3)CC2)C1)C1CC1
C34H45FN6O3
604.771000
OOFPFUFMRJLBPS-KFUJTCAESA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725703
Local ready
Direct docking supported
E3L036098
BDB036098
US20250074910, Example 13-1
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C37H50FN5O3
631.837000
FMUNKTNFINIVHW-WHBSMULTSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725704; PubChem:CID176456273
Local ready
Direct docking supported
E3L036099
BDB036099
US20250074910, Example 13-2
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C37H50FN5O3
631.837000
FMUNKTNFINIVHW-YRTBUHGYSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725705; PubChem:CID176456274
Local ready
Direct docking supported
E3L036100
BDB036100
US20250074910, Example 13-1a
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@@H]3CC4CC[C@H]3CC43CCC(=O)C3)CC2)C1)C(C)C
C37H50FN5O3
631.837000
FMUNKTNFINIVHW-IJRINXMVSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725706; PubChem:CID176456275
Local ready
Direct docking supported