E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L036101
BDB036101
US20250074910, Example 13-1b
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@@H]3CC4CC[C@@H]3CC43CCC(=O)C3)CC2)C1)C(C)C
C37H50FN5O3
631.837000
FMUNKTNFINIVHW-MAXHONEJSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725707; PubChem:CID176456276
Local ready
Direct docking supported
E3L036102
BDB036102
US20250074910, Example 13-2a
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC4CC[C@H]3CC43CCC(=O)C3)CC2)C1)C(C)C
C37H50FN5O3
631.837000
FMUNKTNFINIVHW-UNKRMOESSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725708; PubChem:CID176456277
Local ready
Direct docking supported
E3L036103
BDB036103
US20250074910, Example 13-2b
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC4CC[C@@H]3CC43CCC(=O)C3)CC2)C1)C(C)C
C37H50FN5O3
631.837000
FMUNKTNFINIVHW-UTFDEPBJSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725709; PubChem:CID176456278
Local ready
Direct docking supported
E3L036104
BDB036104
US20250074910, Example 14-1
CCN(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C35H47FN6O3
618.798000
XQILKJVGUGHCMV-CIDHCYHYSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725710; PubChem:CID176456279
Local ready
Direct docking supported
E3L036105
BDB036105
US20250074910, Example 14-1a
CCN(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@@H]3CC4CC[C@H]3CC43CCC(=O)C3)CC2)C1)C(C)C
C35H47FN6O3
618.798000
XQILKJVGUGHCMV-YOIVSZLLSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725711; PubChem:CID176456280
Local ready
Direct docking supported
E3L036106
BDB036106
US20250074910, Example 15-1
CC(C)N(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(CC3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H49FN6O3
632.825000
QWVXXZMTHVMLIN-UHFFFAOYSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725712; PubChem:CID176456281
Local ready
Direct docking supported
E3L036107
BDB036107
US20250074910, Example 15-1a
CC(C)N(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H49FN6O3
632.825000
QWVXXZMTHVMLIN-TZNMGBFISA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725713; PubChem:CID176456282
Local ready
Direct docking supported
E3L036108
BDB036108
US20250074910, Example 15-1b
CC(C)N(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C(C)C
C36H49FN6O3
632.825000
QWVXXZMTHVMLIN-AIXKKLOWSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725714; PubChem:CID176456283
Local ready
Direct docking supported
E3L036109
BDB036109
US20250074910, Example 16-2
CC(C)N(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C1CC1
C36H47FN6O3
630.809000
PYYZJMLZLOBWLV-WGQYCQMISA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM725715; PubChem:CID176456284
Local ready
Direct docking supported
E3L036110
BDB036110
BDBM725716
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CC3)CC(=O)C(COC)(COC)C4)CC2)C1)C(C)C
C38H54FN5O5
679.878000
BNULHIXIQDKZQQ-KJJHEHLZSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725716
Local ready
Direct docking supported
E3L036111
BDB036111
BDBM725717
COCC1(COC)C[C@]2(CC[C@@H](CN3CCC4(CC3)CN(c3ncncc3Oc3ccc(F)cc3C(=O)N(C(C)C)C(C)C)C4)CC2)CC1=O
C39H56FN5O5
693.905000
SGCPKRMSTXZQDF-NJFIHASCSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725717
Local ready
Direct docking supported
E3L036112
BDB036112
BDBM725718
COCC1(COC)C[C@]2(CC[C@@H](CN3CCC4(CC3)CN(c3ncncc3Oc3ccc(F)cc3C(=O)N(C(C)C)C(C)C)C4)CC2)CC1=O
C39H56FN5O5
693.905000
SGCPKRMSTXZQDF-NJFIHASCSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725718
Local ready
Direct docking supported
E3L036113
BDB036113
BDBM725719
COCC1(COC)C[C@]2(CC[C@@H](CN3CCC4(CC3)CN(c3ncnnc3Oc3ccc(F)cc3C(=O)N(C(C)C)C(C)C)C4)CC2)NC1=O
C37H54FN7O5
695.881000
IBQAQNLTFHHTBN-YTTSPEFISA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725719
Local ready
Direct docking supported
E3L036114
BDB036114
BDBM725720
CCN(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CC3)CC(=O)C(C)(C)C4)CC2)C1)C(C)C
C36H50FN5O3
619.826000
JYMXBWKKFPPTTQ-PDJULDNZSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725720
Local ready
Direct docking supported
E3L036115
BDB036115
BDBM725721
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CC3)CC(=O)C(C)(C)C4)CC2)C1)C(C)C
C37H52FN5O3
633.853000
SVAZUQYQGBSIOV-ZDPOTYIJSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725721
Local ready
Direct docking supported
E3L036116
BDB036116
BDBM725722
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CC3)CC(=O)C(C)(C)C4)CC2)C1)C(C)C
C37H52FN5O3
633.853000
SVAZUQYQGBSIOV-ZDPOTYIJSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725722
Local ready
Direct docking supported
E3L036117
BDB036117
BDBM725723
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CC3)CC(=O)C(C)(C)C4)CC2)C1)C1CCC1
C38H52FN5O3
645.864000
JXFSLEAMSGGVAS-LPTSBRAISA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725723
Local ready
Direct docking supported
E3L036118
BDB036118
BDBM725724
CC(C)N(C(=O)c1cc(F)ccc1Oc1cncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CC3)CC(=O)C(C)(C)C4)CC2)C1)C1CCC1
C38H52FN5O3
645.864000
JXFSLEAMSGGVAS-LPTSBRAISA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725724
Local ready
Direct docking supported
E3L036119
BDB036119
BDBM725725
CC(C)N(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CC3)CC(=O)C(C)(C)C4)CC2)C1)C(C)C
C36H51FN6O3
634.841000
NYYDKPFAULEZFI-PDJULDNZSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725725
Local ready
Direct docking supported
E3L036120
BDB036120
BDBM725726
CC(C)N(C)C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@H]3CC[C@@]4(CC3)CC(=O)C(C)(C)C4)CC2)C1
C34H47FN6O3
606.787000
OBHXDJQUZCSCFD-VCCCEUOBSA-N Q03164 Histone-lysine N-methyltransferase 2A
BindingDB
BindingDB:BDBM725726
Local ready
Direct docking supported