E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L038001
BDB038001
US12310975, Example 223
Cn1c(=O)c(OC2COC2)cc2cc(Nc3nc(N4CCC(CN5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc21
C40H42ClN9O7
796.285000
QBPLTPPFPIZJQD-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743688; PubChem:CID156292635
Local ready
Direct docking supported
E3L038002
BDB038002
US12310975, Example 224
Cn1c(=O)c(-n2ccnc2)cc2cc(Nc3nc(N4CCC(CN5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc21
C40H40ClN11O5
790.285000
GLYPAJJUDRWEEC-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743689; PubChem:CID176370966
Local ready
Direct docking supported
E3L038003
BDB038003
US12310975, Example 225
Cn1c(=O)c(Cn2cccn2)cc2cc(Nc3nc(N4CCC(CN5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc21
C41H42ClN11O5
804.312000
RFCBFRUYUBQUCF-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743690; PubChem:CID176371090
Local ready
Direct docking supported
E3L038004
BDB038004
US12310975, Example 226
CNC(=O)COc1cc2cc(Nc3nc(N4CCOC(COc5cccc6c5C(=O)N(C5CCC(=O)NC5=O)C6=O)C4)ncc3Cl)ccc2n(C)c1=O
C35H33ClN8O9
745.149000
QRRFYVSKORAIPA-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743691; PubChem:CID156291567
Local ready
Direct docking supported
E3L038005
BDB038005
US12310975, Example 227
CNC(=O)COc1cc2cc(Nc3nc(N4CCC(OC5CN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)C5)CC4)ncc3Cl)ccc2n(C)c1=O
C38H38ClN9O8
784.230000
RGFNIMGPOBHAPJ-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743692; PubChem:CID156291566
Local ready
Direct docking supported
E3L038006
BDB038006
US12310975, Example 228
CNC(=O)COc1cc2cc(Nc3nc(N4CCO[C@H](COc5ccc6c(c5)C(=O)N(C5CCC(=O)NC5=O)C6=O)C4)ncc3Cl)ccc2n(C)c1=O
C35H33ClN8O9
745.149000
POXGOCAZKVFHCQ-GVNKFJBHSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743693; PubChem:CID156278553
Local ready
Direct docking supported
E3L038007
BDB038007
US12310975, Example 229
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(CCN5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc2n(C)c1=O
C40H44ClN11O7
826.315000
CEIBXGINTGCWAV-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743694; PubChem:CID156292317
Local ready
Direct docking supported
E3L038008
BDB038008
US12310975, Example 230
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(CCCN5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc2n(C)c1=O
C41H46ClN11O7
840.342000
FIAIVSMPKRVKIP-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743695; PubChem:CID156292399
Local ready
Direct docking supported
E3L038009
BDB038009
US12310975, Example 231
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(C)C(COc5cccc6c5C(=O)N(C5CCC(=O)NC5=O)C6=O)C4)ncc3Cl)ccc2n(C)c1=O
C36H36ClN9O8
758.192000
UVJBNGFFMZIIJK-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743696; PubChem:CID156292398
Local ready
Direct docking supported
E3L038010
BDB038010
US12310975, Example 232
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(CC5CCN(c6ccc(C(=O)NC7CCC(=O)NC7=O)nc6)CC5)CC4)ncc3Cl)ccc2n(C)c1=O
C38H44ClN11O6
786.294000
HPCUPEMYTJLZNL-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743697; PubChem:CID176371003
Local ready
Direct docking supported
E3L038011
BDB038011
US12310975, Example 233
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(CC5CCN(c6ccc(C(=O)NC7CCC(=O)NC7=O)c(F)c6)CC5)CC4)ncc3Cl)ccc2n(C)c1=O
C39H44ClFN10O6
803.296000
KXJUDIVYHZMKQN-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743698; PubChem:CID176371064
Local ready
Direct docking supported
E3L038012
BDB038012
US12310975, Example 234
CNC(=O)COc1cc2cc(Nc3nc(N4CCN5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5C4)ncc3Cl)ccc2n(C)c1=O
C37H37ClN10O7
769.219000
RBNWVWRASFTTBY-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743699; PubChem:CID156292850
Local ready
Direct docking supported
E3L038013
BDB038013
US12310975, Example 235
Cn1c(=O)c(-c2cnoc2)cc2cc(Nc3nc(N4CCC(CN5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc21
C40H39ClN10O6
791.269000
IAJWXHWAIXHWNG-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743700; PubChem:CID156292882
Local ready
Direct docking supported
E3L038014
BDB038014
US12310975, Example 236
CC(=O)COc1cc2cc(Nc3nc(N4CCN(CCCN5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc2n(C)c1=O
C41H45ClN10O7
825.327000
KLJNDDVWESNESE-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743701; PubChem:CID176370945
Local ready
Direct docking supported
E3L038015
BDB038015
US12310975, Example 237
CNC(=O)COc1cc2cc(Nc3nc(N4CCC[C@H](COc5ccc6c(c5)C(=O)N(C5CCC(=O)NC5=O)C6=O)C4)ncc3Cl)ccc2n(C)c1=O
C36H35ClN8O8
743.177000
NWTUVDYZMHZKRQ-JDEXWRGDSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743702; PubChem:CID156729540
Local ready
Direct docking supported
E3L038016
BDB038016
US12310975, Example 238
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(C)CC4)ncc3Cl)ccc2n(CCCCOc2ccc3c(c2)C(=O)N(C2CCC(=O)NC2=O)C3=O)c1=O
C38H40ClN9O8
786.246000
SFCJFABKNOUFCP-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743703; PubChem:CID156292636
Local ready
Direct docking supported
E3L038017
BDB038017
US12310975, Example 239
CNC(=O)Cc1cc2cc(Nc3nc(N4CCC(CN5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc2n(C)c1=O
C40H43ClN10O6
795.301000
LDGAXXVXNFWPNO-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743704; PubChem:CID156293058
Local ready
Direct docking supported
E3L038018
BDB038018
US12310975, Example 240
CNC(=O)COc1cc2cc(Nc3nc(N4CCN(CC5(O)CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc2n(C)c1=O
C40H43ClN10O8
827.299000
GQQIMZNKPRIBOE-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743705; PubChem:CID176370929
Local ready
Direct docking supported
E3L038019
BDB038019
US12310975, Example 241
CNC(=O)COc1cc2cc(Nc3nc(N4CCCC(OC5CCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc2n(C)c1=O
C41H44ClN9O8
826.311000
UQOHGXRAWHBRJH-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743706; PubChem:CID176371074
Local ready
Direct docking supported
E3L038020
BDB038020
US12310975, Example 242
CNC(=O)COc1cc2cc(Nc3nc(N4CCC(OC5CCCN(c6ccc7c(c6)C(=O)N(C6CCC(=O)NC6=O)C7=O)CC5)CC4)ncc3Cl)ccc2n(C)c1=O
C41H44ClN9O8
826.311000
UVHPDALETHJTRK-UHFFFAOYSA-N P41182 B-cell lymphoma 6 protein
BindingDB, PubChem
BindingDB:BDBM743707; PubChem:CID176371098
Local ready
Direct docking supported