E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L041241
BDB041241
US20250289799, Example 202
COc1cnc(-c2c(C)cnn2C(C)C)nc1NCc1ccc(-c2nc(C(F)(F)F)cn2C)cc1
C24H26F3N7O
485.514000
YFIPPKQEZLPFMU-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772042; PubChem:CID176244200
Local ready
Direct docking supported
E3L041242
BDB041242
US20250289799, Example 203
C#Cc1cnc(-c2c(C)cnn2C(C)C)nc1NCc1ccc(-c2nc(C(F)(F)F)cn2C)cc1
C25H24F3N7
479.510000
HKHXSSKRWRLFRI-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772043; PubChem:CID176244203
Local ready
Direct docking supported
E3L041243
BDB041243
US20250289799, Example 204
COc1cnc(-c2c(OC)ncnc2C2CC2)nc1N(O)Cc1ccc(-c2nc(C(F)(F)F)cn2C)cc1
C25H24F3N7O3
527.507000
HPYSSIJSHKEZAG-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772044; PubChem:CID175444710
Local ready
Direct docking supported
E3L041244
BDB041244
US20250289799, Example 205
COc1cnc(-c2c(C)cnn2C2CC2)nc1N(O)Cc1ccc(-c2nc(C(F)(F)F)cn2C)cc1
C24H24F3N7O2
499.497000
OJLXTFCQRVJVCY-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772045; PubChem:CID175444712
Local ready
Direct docking supported
E3L041245
BDB041245
US20250289799, Example 206
COc1cnc(-c2c(OC)ncnc2C2CC2)nc1N(C#N)Cc1ccc(-c2nc(C(F)(F)F)cn2C)cc1
C26H23F3N8O2
536.518000
IKFOMFDXNMVTCF-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772046; PubChem:CID175907423
Local ready
Direct docking supported
E3L041246
BDB041246
US20250289799, Example 207
COc1cnc(-c2c(OC)ncnc2C2CC2)nc1N(C)CC12C3C4C1C1C2C3C41c1nc(C(F)(F)F)cn1C
C28H28F3N7O2
551.573000
ZFEAWGRRYDGLEV-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772047; PubChem:CID176204093
Local ready
Direct docking supported
E3L041247
BDB041247
US20250289799, Example 209
COc1cnc(-c2c(Cl)cnn2C(C)C)nc1NCC12CCC(c3nc(C(F)(F)F)cn3C)(CC1)OC2
C24H29ClF3N7O2
539.990000
SFCQOUXIEJQNNJ-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772048; PubChem:CID175907410
Local ready
Direct docking supported
E3L041248
BDB041248
US20250289799, Example 210
COc1cnc(-c2c(OC)ncnc2C2CC2)nc1NCC12CCC(c3nc(C(F)(F)F)cn3C)(CC1)OC2
C26H30F3N7O3
545.566000
KXZKCNXMMGOWRB-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772049; PubChem:CID177269182
Local ready
Direct docking supported
E3L041249
BDB041249
US20250289799, Example 211
COc1cnc(-c2c(Cl)cnn2C(C)C)nc1N(C)CC12CCC(c3nc(C(F)(F)F)cn3C)(CC1)OC2
C25H31ClF3N7O2
554.017000
RLRFPCNAOQAEEJ-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772050; PubChem:CID175907392
Local ready
Direct docking supported
E3L041250
BDB041250
US20250289799, Example 212
COc1cnc(-c2c(OC)ncnc2C2CC2)nc1N(C)CC12CCC(c3nc(C(F)(F)F)cn3C)(CC1)OC2
C27H32F3N7O3
559.593000
OQMQOMZZMWYWCM-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772051; PubChem:CID176204082
Local ready
Direct docking supported
E3L041251
BDB041251
US20250289799, Example 215
COc1cnc(-c2c(OC)ncnc2C2CC2)nc1NCC12C3C4C1C1C2C3C41c1nc(C(F)(F)F)cn1C
C27H26F3N7O2
537.546000
JYGBREYLRVNUCB-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772052; PubChem:CID177269244
Local ready
Direct docking supported
E3L041252
BDB041252
US20250289799, Example 216
COc1cnc(-c2c(OC)ncnc2C2CC2)nc1NCC12C3C4C1C1C2C3C41c1nc(C(F)(F)F)cn1C1CC1
C29H28F3N7O2
563.584000
UTRIMUMRRHBFFU-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM772053; PubChem:CID176204098
Local ready
Direct docking supported
E3L041253
BDB041253
BDBM772337
CCc1cc2ncc(CN3CC(Oc4cnc(C(=O)NC)c(I)c4)C3)cc2[nH]c1=O
C21H22IN5O3
519.343000
UQGWSFJNWABVFI-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM772337; PubChem:CID177858809
Local ready
Direct docking supported
E3L041254
BDB041254
BDBM772339
CCc1cc2ncc([C@@H](C)N3CC(Oc4ccc(C(=O)NC)nc4)C3)cc2[nH]c1=O
C22H25N5O3
407.474000
SRAQBMAZUKRMMA-CYBMUJFWSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM772339; PubChem:CID168188452
Local ready
Direct docking supported
E3L041255
BDB041255
BDBM772340
CCc1cc2ncc([C@H](C)N3CC(Oc4ccc(C(=O)NC)nc4)C3)cc2[nH]c1=O
C22H25N5O3
407.474000
SRAQBMAZUKRMMA-ZDUSSCGKSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM772340; PubChem:CID176886667
Local ready
Direct docking supported
E3L041256
BDB041256
BDBM772341
CNC(=O)c1ccc(OC2CN(Cc3cnc4cc(C5CC5)c(=O)[nH]c4c3)C2)cn1
C22H23N5O3
405.458000
MZQLJDVPHFCVTE-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM772341; PubChem:CID168188397
Local ready
Direct docking supported
E3L041257
BDB041257
BDBM772342
CCc1cc2ncc(CN3CCC(Cc4ccc(C(=O)NC)nc4)C3)cc2[nH]c1=O
C23H27N5O2
405.502000
IMEZCZTVBJEACI-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM772342; PubChem:CID177755351
Local ready
Direct docking supported
E3L041258
BDB041258
BDBM772343
CCc1cc2ncc(CN3C[C@@H](F)[C@@H](Oc4ccc(C(=O)NC)nc4)C3)cc2[nH]c1=O
C22H24FN5O3
425.464000
MJWRDYXAJRMSTH-UZLBHIALSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM772343; PubChem:CID168188379
Local ready
Direct docking supported
E3L041259
BDB041259
BDBM772345
CCc1cc2ncc(CN3CC[C@@H](Oc4ccc(C(=O)NC)nc4)C3)cc2[nH]c1=O
C22H25N5O3
407.474000
RAFFPMUHRKUXIM-QGZVFWFLSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM772345; PubChem:CID168188456
Local ready
Direct docking supported
E3L041260
BDB041260
BDBM772346
CNC(=O)c1ccc(OC2CCN(Cc3cnc4cc(C5CC5)c(=O)[nH]c4c3)C2)cn1
C23H25N5O3
419.485000
IOJMAKPLFDPDIB-UHFFFAOYSA-N P09874 Poly [ADP-ribose] polymerase 1
BindingDB, PubChem
BindingDB:BDBM772346; PubChem:CID177269560
Local ready
Direct docking supported