E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L004181
BDB004181
US20250388593, Example 344
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)CCc1ccc3c(=O)n(C4CCCC(=O)NC4=O)c(=O)n(C)c3c1)c1nnc(C)n1-2
C45H52ClN9O6S
882.488000
KRCMKFOPBPLBRP-CDRRMRQFSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95575; PubChem:CID177778496
Local ready
Direct docking supported
E3L004182
BDB004182
US20250388593, Example 345
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCNC(=O)CN1CCC3(CCCC(=O)NC3=O)CC1=O)c1nnc(C)n1-2
C38H47ClN8O5S
763.365000
NTCBVQIWOLROIG-XRTOLJPQSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95576; PubChem:CID177778579
Local ready
Direct docking supported
E3L004183
BDB004183
US20250388593, Example 346
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)CCc1ccc3c(N4CCCC(=O)NC4=O)nn(C)c3c1)c1nnc(C)n1-2
C43H51ClN10O4S
839.467000
MBTIBZGVHHQLFC-XIFFEERXSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95577; PubChem:CID177778517
Local ready
Direct docking supported
E3L004184
BDB004184
US20250388593, Example 347
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)N[C@@H](CC(=O)NCCCCCCCNC(=O)COc1cccc(C(=O)NC3CCCC(=O)NC3=O)n1)c1nnc(C)n1-2
C40H48ClN9O6S
818.401000
NOPPIIOIFWOCHG-IYQUFBQYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95578; PubChem:CID178289708
Local ready
Direct docking supported
E3L004185
BDB004185
US20250388593, Example 348
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)/C=C/c1cccc3c1N(C)C(=O)C3(C)N1C=CCC(=O)NC1=O)c1nnc(C)n1-2
C45H50ClN9O5S
864.473000
LMBLMXREIFRXGC-HAZROESFSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95579; PubChem:CID177903186
Local ready
Direct docking supported
E3L004186
BDB004186
US20250388593, Example 349
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)/C=C/c1ccc([C@H]3C[C@H](N4C=CCC(=O)NC4=O)C(=O)N3C)cc1)c1nnc(C)n1-2
C46H52ClN9O5S
878.500000
MUUDDGOMDFKDOL-ZLESKCDHSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95580; PubChem:CID177903210
Local ready
Direct docking supported
E3L004187
BDB004187
US20250388593, Example 350
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCNC(=O)Cn1c(=O)c(=O)n(C3CCCC(=O)NC3=O)c3ccccc31)c1nnc(C)n1-2
C42H46ClN9O6S
840.407000
LCGQKDBBERNFAL-QGFKTNLFSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95581; PubChem:CID177778527
Local ready
Direct docking supported
E3L004188
BDB004188
US20250388593, Example 352
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)CN1C(=O)[C@@](C)(N3CCCC(=O)NC3=O)c3ccccc31)c1nnc(C)n1-2
C43H50ClN9O5S
840.451000
BCVZQZCKOCHVNL-ZUHDFBLUSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95582; PubChem:CID178289709
Local ready
Direct docking supported
E3L004189
BDB004189
US20250388593, Example 354
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCCCC(=O)N1CCC(c3cnc(N4CCC5(CCCC(=O)NC5=O)C4)nc3)CC1)c1nnc(C)n1-2
C48H61ClN10O4S
909.602000
QLZGISLMFIAEJI-LHPIIVOHSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95583; PubChem:CID171844136
Local ready
Direct docking supported
E3L004190
BDB004190
US20250388593, Example 355
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCCCC(=O)N1CCC(c3cccc(NC45CCC(CC4)C(=O)NC5=O)c3)CC1)c1nnc(C)n1-2
C49H61ClN8O4S
893.599000
OKJAOOTVRFXNEE-NSPNILJUSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95584; PubChem:CID177778518
Local ready
Direct docking supported
E3L004191
BDB004191
US20250388593, Example 356
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCCCC(=O)N1CCC(c3ccc(OC4CCCC(=O)NC4=O)cc3)CC1)c1nnc(C)n1-2
C47H58ClN7O5S
868.545000
GFHUCYRLWSFBPJ-SQTCDLSVSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95585; PubChem:CID178289710
Local ready
Direct docking supported
E3L004192
BDB004192
US20250388593, Example 357
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCCCC(=O)N1CCc3c(ncnc3N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)C1)c1nnc(C)n1-2
C48H56ClN11O6S
950.567000
DSIYHDAIADKPDZ-KNPJQLEMSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95586; PubChem:CID177778519
Local ready
Direct docking supported
E3L004193
BDB004193
US20250388593, Example 358
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCCCC(=O)N1CCC(c3ccc(C45CCC(O4)C(=O)NC5=O)cc3)CC1)c1nnc(C)n1-2
C47H56ClN7O5S
866.529000
JUHQNWRFSGKHHA-RAANQGNKSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95587; PubChem:CID178289711
Local ready
Direct docking supported
E3L004194
BDB004194
US20250388593, Example 360-3
C[C@@H]1CC2c3ccccc3NC2[C@@H](c2cnc(N3CCC(CN(C)CCCCCCCc4cccc5c4n(C)c(=O)n5C4CCCC(=O)NC4=O)CC3)nc2)N1CC(C)(C)C
C49H69N9O3
832.151000
MNXUYZCHYCRTSN-GMWDRQFZSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95588; PubChem:CID178289712
Local ready
Direct docking supported
E3L004195
BDB004195
BDBM95589
CCOC(=O)c1ccc(CCCCCCCN(C)C(=O)OC(C)(C)C)cc1
C22H35NO4
377.525000
CHOJEHXYGLOTHO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95589; PubChem:CID175638805
Local ready
Direct docking supported
E3L004196
BDB004196
BDBM96555
Cc1ccc(NC(=O)CCN2CCc3ccccc3C2)cc1
C19H22N2O
294.398000
RTIXNDCLLAJULP-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM96555; PubChem:CID651797
Local ready
Direct docking supported
E3L004197
BDB004197
BDBM96969
O=C1CCC(N2Cc3cc4c(cc3C2=O)OC[C@@H]2CN(CC3CCN(c5ccc([C@@H]6c7ccc(O)cc7OC[C@@H]6c6ccccc6)cc5)CC3)CCN42)C(=O)N1
C45H47N5O6
753.900000
TYEXTZBQGMCLAT-GTNLMGJLSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM96969
Local ready
Direct docking supported
E3L004198
BDB004198
BDBM96970
O=C1CCC(N2Cc3cc4c(cc3C2=O)OC[C@@H]2CN(CC3CCN(c5ccc([C@@H]6c7ccc(O)cc7OC[C@@H]6c6ccccc6)cc5F)CC3)CCN42)C(=O)N1
C45H46FN5O6
771.890000
KUTJIEUAPQAQAC-PQTOXHJOSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM96970
Local ready
Direct docking supported
E3L004199
BDB004199
BDBM96971
O=C1CCC(N2C(=O)c3cc4c(cc3C2=O)CN(CC(=O)N2CCC3(CC2)CCN(c2ccc([C@@H]5c6ccc(O)cc6OC[C@@H]5c5ccccc5)cc2)CC3)C4)C(=O)N1
C47H47N5O7
793.921000
YDMQYRRRRMPTJD-PQGYCHLWSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM96971
Local ready
Direct docking supported
E3L004200
BDB004200
BDBM96972
O=C1CCC(N2C(=O)c3cc4c(cc3C2=O)CN(CC(=O)N2CCC3(CC2)CCN(c2ncc([C@H]5c6ccc(O)cc6OC[C@H]5c5ccccc5)cn2)CC3)C4)C(=O)N1
C45H45N7O7
795.897000
CXEDLWYNPGRCDG-BTHNLOPKSA-N Q16531, Q96SW2 DNA damage-binding protein 1
BindingDB
BindingDB:BDBM96972
Local ready
Direct docking supported