E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L004161
BDB004161
US20250388593, Example 323
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCc1ccc(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cc1Cl)c1nnc(C)n1-2
C41H45Cl2N7O4S
802.829000
DJTGLXVSSWAQOP-IROIYFLTSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95555; PubChem:CID177778543
Local ready
Direct docking supported
E3L004162
BDB004162
US20250388593, Example 324
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCc1cccc3c(C(=O)N4CCC5(CCCC(=O)NC5=O)C4)cccc13)c1nnc(C)n1-2
C45H48ClN7O4S
818.444000
SJOJUYMOKBWLQY-JVNLBVJRSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95556; PubChem:CID177778561
Local ready
Direct docking supported
E3L004163
BDB004163
US20250388593, Example 326
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCn1ccc3c(C(=O)N4CCC5(CCCC(=O)NC5=O)CC4)cccc31)c1nnc(C)n1-2
C44H49ClN8O4S
821.448000
CQDVPQLGTOPMBY-UMSFTDKQSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95557; PubChem:CID178289704
Local ready
Direct docking supported
E3L004164
BDB004164
US20250388593, Example 327
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCc1ccc(C(=O)N3CCN(C4CCCC(=O)NC4=O)C(=O)C3)cc1Cl)c1nnc(C)n1-2
C42H46Cl2N8O5S
845.854000
FXLJSFBAESPGBR-JEFWXSHNSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95558; PubChem:CID177778578
Local ready
Direct docking supported
E3L004165
BDB004165
US20250388593, Example 328
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)c1cc3c(N4CCC5(CCCC(=O)NC5=O)C4)ncnc3n1C)c1nnc(C)n1-2
C44H52ClN11O4S
866.493000
SPKMTNUVBMEGHH-UJBMNDQASA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95559; PubChem:CID171843863
Local ready
Direct docking supported
E3L004166
BDB004166
US20250388593, Example 329
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)c1ccc3nc(N4CCC5(CCCC(=O)NC5=O)C4)sc3c1)c1nnc(C)n1-2
C44H50ClN9O4S2
868.530000
CPEUHKVEFSZSDV-WPTVCOTBSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95560; PubChem:CID177778548
Local ready
Direct docking supported
E3L004167
BDB004167
US20250388593, Example 330
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)c1ccc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)nc1)c1nnc(C)n1-2
C44H49ClN10O6S
881.460000
MMFCNANFHJSMLL-CYZZXXEPSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95561; PubChem:CID177778520
Local ready
Direct docking supported
E3L004168
BDB004168
US20250388593, Example 331
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)CN1CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C1)c1nnc(C)n1-2
C40H48ClN9O6S
818.401000
XUIFDPLURSDDDN-XLTVJXRZSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95562; PubChem:CID177778595
Local ready
Direct docking supported
E3L004169
BDB004169
US20250388593, Example 332
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)Cn1c(=O)n(C3CCCC(=O)NC3=O)c3ccccc31)c1nnc(C)n1-2
C42H48ClN9O5S
826.424000
QHGDIJNBWZOFRR-JKNLKRECSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95563; PubChem:CID177778534
Local ready
Direct docking supported
E3L004170
BDB004170
US20250388593, Example 333
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)CCc1cccc3c1n(C)c(=O)n3C1CCCC(=O)NC1=O)c1nnc(C)n1-2
C44H52ClN9O5S
854.478000
HIUNHNCUFRRBAM-TXEYEHERSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95564; PubChem:CID177778535
Local ready
Direct docking supported
E3L004171
BDB004171
US20250388593, Example 334
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)CCc1nn(C3CCCC(=O)NC3=O)c3ccccc13)c1nnc(C)n1-2
C43H50ClN9O4S
824.452000
PSYYEQYXFLOMHJ-ITLBEBSESA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95565; PubChem:CID177778607
Local ready
Direct docking supported
E3L004172
BDB004172
US20250388593, Example 335
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)c1ccc(N3CCC4(CCCC(=O)NC4=O)CC3=O)nc1)c1nnc(C)n1-2
C43H50ClN9O5S
840.451000
XJAAJYRGTRIJCO-HYXMPAGBSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95566; PubChem:CID177778571
Local ready
Direct docking supported
E3L004173
BDB004173
US20250388593, Example 336
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)CCc1ccc(-c3nn(C4CCCC(=O)NC4=O)c(=O)n3C)cc1)c1nnc(C)n1-2
C45H53ClN10O5S
881.504000
DFTFWQKJEFLECJ-SFCXHYMASA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95567; PubChem:CID177778480
Local ready
Direct docking supported
E3L004174
BDB004174
US20250388593, Example 337
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)N[C@@H](CC(=O)NCCCCCCCCNC(=O)c1ccc3nc(N4CC5(CC(=O)N(C6CCC(=O)NC6=O)C5=O)C4)sc3c1)c1nnc(C)n1-2
C46H51ClN10O6S2
939.565000
IRHMIHBEQWFGMI-YDTJSEEZSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95568; PubChem:CID178289705
Local ready
Direct docking supported
E3L004175
BDB004175
US20250388593, Example 338
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)N[C@@H](CC(=O)NCCCCCCCCNC(=O)c1ccc(OC3CCCC(=O)NC3=O)nc1)c1nnc(C)n1-2
C39H47ClN8O5S
775.376000
ZDQQFDRHEKOZBR-WVJCAMEYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95569; PubChem:CID178289706
Local ready
Direct docking supported
E3L004176
BDB004176
US20250388593, Example 339
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)COc1ccc(C#N)c(N3CCC4(CCCC(=O)NC4=O)C3)c1)c1nnc(C)n1-2
C45H52ClN9O5S
866.489000
YRKDUHNLJTWQDC-TUIDWXDSSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95570; PubChem:CID177778602
Local ready
Direct docking supported
E3L004177
BDB004177
US20250388593, Example 340
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)COc1ccccc1-c1cn(C3CCCC(=O)NC3=O)nn1)c1nnc(C)n1-2
C43H49ClN10O5S
853.450000
VXUFGYGFPINWBG-TXEYEHERSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95571; PubChem:CID177778586
Local ready
Direct docking supported
E3L004178
BDB004178
US20250388593, Example 341
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)CCc1ccc3c(c1)oc(=O)n3C1CCCC(=O)NC1=O)c1nnc(C)n1-2
C43H49ClN8O6S
841.435000
HDGFGQJPACYVGG-MOJIJOCKSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95572; PubChem:CID177778505
Local ready
Direct docking supported
E3L004179
BDB004179
US20250388593, Example 342
CC1=C(C)C2C(c3ccc(Cl)cc3)N[C@@H](CC(=O)NCCCCCCCCNC(=O)CCc3ccc4c(c3)sc(=O)n4C3CCCC(=O)NC3=O)c3nnc(C)n3C2S1
C43H53ClN8O5S2
861.535000
IHSYJKYHOFQELK-YEUIJVHFSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95573; PubChem:CID178289707
Local ready
Direct docking supported
E3L004180
BDB004180
US20250388593, Example 343
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCNC(=O)CCc1ccc3c(c1)sc(=O)n3C1CCCC(=O)NC1=O)c1nnc(C)n1-2
C43H49ClN8O5S2
857.503000
HCCRLNGYWASQOE-MOJIJOCKSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95574; PubChem:CID177778570
Local ready
Direct docking supported