E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L004121
BDB004121
US20250388593, Example 273-2
CC(C)(C)OC(=O)N1CC2(CC(=O)N(C3CCCC(=O)NC3=O)C2=O)C1
C17H23N3O6
365.386000
YIYRCDHIAJMYNH-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95515; PubChem:CID171843962
Local ready
Direct docking supported
E3L004122
BDB004122
US20250388593, Example 274
O=C1CCCC(N2C(=O)OCC3=C2C=CC([N+](=O)[O-])C3)C(=O)N1
C14H15N3O6
321.289000
KPSOMMQHIQZZIO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95516; PubChem:CID178289700
Local ready
Direct docking supported
E3L004123
BDB004123
US20250388593, Example 275
CC(C)(C)OC(=O)Cn1c(=O)c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
C20H23N3O6
401.419000
YFGDGXOKMXCCGS-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95517; PubChem:CID171844021
Local ready
Direct docking supported
E3L004124
BDB004124
BDBM95518
CC(C)(C)OC(=O)N1CCC(c2ccc(OC3CCCCNC3=O)cc2)CC1
C22H32N2O4
388.508000
KXMUUPVYJJQRKQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95518; PubChem:CID171844172
Local ready
Direct docking supported
E3L004125
BDB004125
US20250388593, Example 277
O=C1CCC(N2C(=O)CC3(CN(C4CCN(CC(=O)OCc5ccccc5)CC4)C3)C2=O)C(=O)N1
C25H30N4O6
482.537000
CDXJJHQFUNITCJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95519; PubChem:CID171844055
Local ready
Direct docking supported
E3L004126
BDB004126
US20250388593, Example 278
CC(C)(C)OC(=O)NCCc1ccc(S(=O)(=O)N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)cc1
C24H30N4O8S
534.591000
RZPYXTZWZXDZKT-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95520; PubChem:CID171843902
Local ready
Direct docking supported
E3L004127
BDB004127
BDBM95521
CN(C1CCCC(=O)NC1=O)S(=O)(=O)c1ccc(CCCCC(=O)OC(C)(C)C)cc1
C22H32N2O6S
452.573000
NTMGEMKILSHXFL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95521; PubChem:CID176081783
Local ready
Direct docking supported
E3L004128
BDB004128
US20250388593, Example 281
Cn1nc(N2CC=CC(=O)NC2=O)c2ccc(Br)cc21
C13H11BrN4O2
335.161000
GNPVNYNRDPEOAV-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95522; PubChem:CID175638780
Local ready
Direct docking supported
E3L004129
BDB004129
US20250388593, Example 282
Cn1nc(N2CC=CC(=O)NC2=O)c2ccc(C3CCN(C(=O)OC(C)(C)C)CC3)cc21
C23H29N5O4
439.516000
SGKGYFVJJQTXNA-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95523; PubChem:CID175638945
Local ready
Direct docking supported
E3L004130
BDB004130
US20250388593, Example 283
CC1(N2CC=CC(=O)NC2=O)C(=O)N(CC(=O)OCc2ccccc2)c2ccccc21
C23H21N3O5
419.437000
PKOKNMCPPLAELA-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95524; PubChem:CID171844092
Local ready
Direct docking supported
E3L004131
BDB004131
US20250388593, Example 287
Cn1nc(N2C=CCC(=O)NC2=O)c2ccc(/C=C/C(=O)OC(C)(C)C)cc21
C20H22N4O4
382.420000
PSEHPWMLVKECDN-CSKARUKUSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95525; PubChem:CID177903206
Local ready
Direct docking supported
E3L004132
BDB004132
US20250388593, Example 288
CN1C(=O)C(C)(N2C=CCC(=O)NC2=O)c2ccc(/C=C/C(=O)OC(C)(C)C)cc21
C22H25N3O5
411.458000
AHUSEVJLQNTMSS-PKNBQFBNSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95526; PubChem:CID177903164
Local ready
Direct docking supported
E3L004133
BDB004133
US20250388593, Example 289
CN1C(=O)C(C)(N2C=CCC(=O)NC2=O)c2cccc(/C=C/C(=O)OC(C)(C)C)c21
C22H25N3O5
411.458000
DVILLNUYBTXVRA-VAWYXSNFSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95527; PubChem:CID177903192
Local ready
Direct docking supported
E3L004134
BDB004134
US20250388593, Example 290
CN1C(=O)[C@H](N2C=CCC(=O)NC2=O)C[C@H]1c1ccc(/C=C/C(=O)OC(C)(C)C)cc1
C23H27N3O5
425.485000
VJWPRJLERPFZHI-HZOVXUMNSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95528; PubChem:CID177903191
Local ready
Direct docking supported
E3L004135
BDB004135
US20250388593, Example 291
Cn1nc(N2CCCC(=O)NC2=O)c2ccc(CCC(=O)OC(C)(C)C)cc21
C20H26N4O4
386.452000
PKZNNCSCTGPTRQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95529; PubChem:CID175638955
Local ready
Direct docking supported
E3L004136
BDB004136
US20250388593, Example 292
CC1(N2CCCC(=O)NC2=O)C(=O)N(CC(=O)O)c2ccccc21
C16H17N3O5
331.328000
JWRADJBLLZMALB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95530; PubChem:CID175638956
Local ready
Direct docking supported
E3L004137
BDB004137
US20250388593, Example 296
Cc1ccc(NC(=O)Nc2ccc3nc(N4CCC5(CCCC(=O)NC5=O)C4)sc3c2)cc1Cl
C24H24ClN5O3S
498.008000
HXVFUHLXDBMFOS-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95531; PubChem:CID171843955
Local ready
Direct docking supported
E3L004138
BDB004138
US20250388593, Example 297
Nc1ccc(N2CCC(N3CCCC(=O)NC3=O)C2=O)cc1
C15H18N4O3
302.334000
XXPFHLQNMIJNFE-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95532; PubChem:CID171844004
Local ready
Direct docking supported
E3L004139
BDB004139
US20250388593, Example 298
CC(C)(C)OC(=O)CCCCCNc1cccc(C2CCCC(=O)NC2=O)c1
C22H32N2O4
388.508000
LYDZPZTVVXPIDS-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95533; PubChem:CID175638791
Local ready
Direct docking supported
E3L004140
BDB004140
US20250388593, Example 300
CC(C)(C)OC(=O)CCCCCNc1ccc(C(=O)N2CCC3(CCCC(=O)NC3=O)C2)cc1
C26H37N3O5
471.598000
BWRKEMZNCRCCPC-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95534; PubChem:CID175638960
Local ready
Direct docking supported