E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L004141
BDB004141
US20250388593, Example 301
CC(C)(C)OC(=O)CCCCCNc1ccc(N2CCC3(CCCC(=O)NC3=O)CC2=O)cc1
C26H37N3O5
471.598000
BIZNUXAVHYQRRJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95535; PubChem:CID177778512
Local ready
Direct docking supported
E3L004142
BDB004142
US20250388593, Example 302
CC(C)(C)OC(=O)CCCCCNc1ccc(N2CCC(N3CCCC(=O)NC3=O)C2=O)cc1
C25H36N4O5
472.586000
FAFLNGRXCVJQPG-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95536; PubChem:CID175638962
Local ready
Direct docking supported
E3L004143
BDB004143
US20250388593, Example 303
CC(C)(C)OC(=O)NCCCCCCCNc1ccc2nc(N3CCCC(=O)NC3=O)sc2c1
C24H35N5O4S
489.642000
MWDBNCLOENVOAH-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95537; PubChem:CID171843950
Local ready
Direct docking supported
E3L004144
BDB004144
US20250388593, Example 304
CC(C)(C)OC(=O)NCCCCCCCNc1ccc(N2CCC3(CCCC(=O)NC3=O)CC2=O)cc1
C28H42N4O5
514.667000
XGBMMVCMYMLZQI-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95538; PubChem:CID177778492
Local ready
Direct docking supported
E3L004145
BDB004145
US20250388593, Example 307
CC(C)(C)[Si](C)(C)OC1c2cccc(Br)c2CC1N1CC=CC(=O)NC1=O
C20H27BrN2O3Si
451.437000
XWVHGWPTQJGQIT-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95539; PubChem:CID171844049
Local ready
Direct docking supported
E3L004146
BDB004146
US20250388593, Example 308
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCc1cccc(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)c1)c1nnc(C)n1-2
C41H46ClN7O4S
768.384000
VPLORICNGYFYKK-IROIYFLTSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95540; PubChem:CID171843914
Local ready
Direct docking supported
E3L004147
BDB004147
US20250388593, Example 309
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCN1CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C1)c1nnc(C)n1-2
C38H45ClN8O5S
761.349000
RMBWBGRORWPKOF-MBMZGMDYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95541; PubChem:CID177778572
Local ready
Direct docking supported
E3L004148
BDB004148
US20250388593, Example 310
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCc1cn(C3CCCC(=O)NC3=O)nn1)c1nnc(C)n1-2
C34H40ClN9O3S
690.274000
NGVAGMGVZUHYTM-QBHOUYDASA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95542; PubChem:CID177778612
Local ready
Direct docking supported
E3L004149
BDB004149
US20250388593, Example 311
CC1=NNC2[C@H](CC(=O)NCCCCCCc3ccc(S(=O)(=O)N(C)C4CCCC(=O)NC4=O)cc3)N=C(c3ccc(Cl)cc3)c3c(sc(C)c3C)N12
C38H46ClN7O5S2
780.417000
AHCSUNKUFNTDKU-ZXKMXVNOSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95543; PubChem:CID178289701
Local ready
Direct docking supported
E3L004150
BDB004150
US20250388593, Example 312
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCNc1ccc3nc(N4CCCC(=O)NC4=O)sc3c1)c1nnc(C)n1-2
C38H42ClN9O3S2
772.401000
NQEMKINHZPKSDU-LJAQVGFWSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95544; PubChem:CID177778528
Local ready
Direct docking supported
E3L004151
BDB004151
US20250388593, Example 313
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCNc1ccc(N3CCC(N4CCCC(=O)NC4=O)C3=O)cc1)c1nnc(C)n1-2
C41H48ClN9O4S
798.414000
KMALUONDLVLMIV-JEFWXSHNSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95545; PubChem:CID177778489
Local ready
Direct docking supported
E3L004152
BDB004152
US20250388593, Example 314
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCNc1ccc(N3CCC4(CCCCNC4=O)CC3=O)cc1)c1nnc(C)n1-2
C42H51ClN8O3S
783.443000
QDECLGFVFRTXFR-QWPNAQDASA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95546; PubChem:CID178289702
Local ready
Direct docking supported
E3L004153
BDB004153
US20250388593, Example 315
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCNc1nccc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)n1)c1nnc(C)n1-2
C37H38ClN11O5S
784.303000
ITCZNTPKFYQAHO-SKCDSABHSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95547; PubChem:CID177778577
Local ready
Direct docking supported
E3L004154
BDB004154
US20250388593, Example 316
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCc1ccc(-c3cn(C4CCCC(=O)NC4=O)nn3)cc1)c1nnc(C)n1-2
C39H42ClN9O3S
752.345000
OQTPCKLBPCCNLG-TZYYSAMKSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95548; PubChem:CID177778593
Local ready
Direct docking supported
E3L004155
BDB004155
US20250388593, Example 317
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCc1ccc(S(=O)(=O)N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)cc1)c1nnc(C)n1-2
C38H37ClN8O7S2
817.350000
PWLMGDMUBUIGKV-MBMZGMDYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95549; PubChem:CID177778573
Local ready
Direct docking supported
E3L004156
BDB004156
US20250388593, Example 318
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCn1ccc3c(N4CC5(CC(=O)N(C6CCC(=O)NC6=O)C5=O)C4)ncnc31)c1nnc(C)n1-2
C44H48ClN11O5S
878.460000
VUFKXVLHKFWNOF-CYZZXXEPSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95550; PubChem:CID177778481
Local ready
Direct docking supported
E3L004157
BDB004157
US20250388593, Example 319
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCn1ccc3c(N4CCC5(CCCC(=O)NC5=O)C4)ncnc31)c1nnc(C)n1-2
C42H49ClN10O3S
809.441000
QUYMFZQLECREDM-MUAQNSFOSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95551; PubChem:CID177778591
Local ready
Direct docking supported
E3L004158
BDB004158
US20250388593, Example 320
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCCCCOc1ccc(C#N)c(N3CCC4(CCCC(=O)NC4=O)C3)c1)c1nnc(C)n1-2
C43H49ClN8O4S
809.437000
LTHIRRACQYNOCB-RGQUUCBMSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95552; PubChem:CID177778506
Local ready
Direct docking supported
E3L004159
BDB004159
US20250388593, Example 321
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCOc1ccc3c(c1)SC(N1CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C1)N3)c1nnc(C)n1-2
C42H44ClN9O6S2
870.458000
HWUQPMLSHWUHMC-BMBXGUDTSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95553; PubChem:CID178289703
Local ready
Direct docking supported
E3L004160
BDB004160
US20250388593, Example 322
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@@H](CC(=O)NCCCCCOc1ccc3nc(N4CCC5(CCCC(=O)NC5=O)C4)sc3c1)c1nnc(C)n1-2
C40H43ClN8O4S2
799.423000
KNJULYUGHFKKKM-AYLNDXQWSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95554; PubChem:CID177778582
Local ready
Direct docking supported