E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L001421
BDB001421
1,4-Benzodiazepine-2,5-dione scaffold, 21
COCCOCCN1C(=O)[C@H](c2ccc(Cl)cc2)N([C@H](C)c2ccc(Cl)cc2N)C(=O)c2cc(I)ccc21
C28H28Cl2IN3O4
668.359000
RTYOJEHILRDOMQ-QUGAMOGWSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31289; PubChem:CID9917797
Local ready
Direct docking supported
E3L001422
BDB001422
1,4-Benzodiazepine-2,5-dione scaffold, 49
COCCOCCN1C(=O)[C@H](c2ccc(Cl)cc2)N(Cc2ccc(Cl)cc2O)C(=O)c2cc(I)ccc21
C27H25Cl2IN2O5
655.316000
ZMHHWPQWCVSKMV-VWLOTQADSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31290; PubChem:CID44176173
Local ready
Direct docking supported
E3L001423
BDB001423
1,4-Benzodiazepine-2,5-dione scaffold, 50
C=CCOc1cc(Cl)ccc1CN1C(=O)c2cc(I)ccc2N(CCOCCOC)C(=O)[C@@H]1c1ccc(Cl)cc1
C30H29Cl2IN2O5
695.381000
ROSFDQQEKJVLGC-NDEPHWFRSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31291; PubChem:CID44176174
Local ready
Direct docking supported
E3L001424
BDB001424
1,4-Benzodiazepine-2,5-dione scaffold, 51
COCCOCCN1C(=O)[C@H](c2ccc(Cl)cc2)N(Cc2ccc(Cl)nc2N)C(=O)c2cc(I)ccc21
C26H25Cl2IN4O4
655.320000
AOFJFROKSQUNCA-QHCPKHFHSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31292; PubChem:CID44176175
Local ready
Direct docking supported
E3L001425
BDB001425
1,4-Benzodiazepine-2,5-dione scaffold, 22
C[C@H](c1ccc(Cl)cc1N)N1C(=O)c2cc(I)ccc2N(CCN2CCOCC2)C(=O)[C@@H]1c1ccc(Cl)cc1
C29H29Cl2IN4O3
679.386000
TXTIZPFXYRRDES-CLYVBNDRSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31293; PubChem:CID11952782
Local ready
Direct docking supported
E3L001426
BDB001426
1,4-Benzodiazepine-2,5-dione scaffold, 23
Nc1cc(Cl)ccc1CN1C(=O)c2cc(I)ccc2N(CCCN2CCOCC2)C(=O)[C@@H]1c1ccc(Cl)cc1
C29H29Cl2IN4O3
679.386000
DIRPNNUWQMTLTK-MHZLTWQESA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31294; PubChem:CID44176176
Local ready
Direct docking supported
E3L001427
BDB001427
1,4-Benzodiazepine-2,5-dione scaffold, 27
C[C@H](c1cc(F)c(Cl)cc1N)N1C(=O)c2cc(I)ccc2N(CCN2CCOCC2)C(=O)[C@@H]1c1ccc(Cl)cc1
C29H28Cl2FIN4O3
697.376000
RETYZFIEVMZHPB-CRYYWNKWSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31295; PubChem:CID11953136
Local ready
Direct docking supported
E3L001428
BDB001428
1,4-Benzodiazepine-2,5-dione scaffold, 28
C[C@H](c1cc(O)c(Cl)cc1N)N1C(=O)c2cc(I)ccc2N(CCN2CCOCC2)C(=O)[C@@H]1c1ccc(Cl)cc1
C29H29Cl2IN4O4
695.385000
CIPUXOASBLBAEP-CRYYWNKWSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31296; PubChem:CID11953137
Local ready
Direct docking supported
E3L001429
BDB001429
1,4-Benzodiazepine-2,5-dione scaffold, 26
O=C1[C@H](c2ccc(Cl)cc2)N(Cc2ccc(Cl)cc2F)C(=O)c2cc(I)ccc2N1CCN1CCOCC1
C28H25Cl2FIN3O3
668.334000
SZUZMYZODLFEHY-SANMLTNESA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31297; PubChem:CID44176177
Local ready
Direct docking supported
E3L001430
BDB001430
1,4-Benzodiazepine-2,5-dione scaffold, 24
Nc1cc(C2(N3C(=O)c4cc(I)ccc4N(CCN4CCOCC4)C(=O)[C@@H]3c3ccc(Cl)cc3)CC2)ccc1Cl
C30H29Cl2IN4O3
691.397000
SKDYLCZPJKRLHY-MHZLTWQESA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31298; PubChem:CID44176178
Local ready
Direct docking supported
E3L001431
BDB001431
1,4-Benzodiazepine-2,5-dione scaffold, 25
Cc1cc(Cl)ccc1CN1C(=O)c2cc(I)ccc2N(CCN2CCOCC2)C(=O)[C@@H]1c1ccc(Cl)cc1
C29H28Cl2IN3O3
664.371000
BWJZWGVPPXHFLK-MHZLTWQESA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31299; PubChem:CID44176179
Local ready
Direct docking supported
E3L001432
BDB001432
1,4-Benzodiazepine-2,5-dione scaffold, 29
CN(C)CCCCN1C(=O)[C@H](c2ccc(Cl)cc2)N(Cc2ccc(Cl)cc2N)C(=O)c2cc(I)ccc21
C28H29Cl2IN4O2
651.376000
JRZMBZBPVQMTFT-SANMLTNESA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31300; PubChem:CID44176180
Local ready
Direct docking supported
E3L001433
BDB001433
1,4-Benzodiazepine-2,5-dione scaffold, 31
CN(C)CCCN1C(=O)[C@H](c2ccc(Cl)cc2)N(Cc2ccc(Cl)cc2N)C(=O)c2cc(I)ccc21
C27H27Cl2IN4O2
637.349000
CUXYJJOQGJZCMF-VWLOTQADSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31301; PubChem:CID44176181
Local ready
Direct docking supported
E3L001434
BDB001434
1,4-Benzodiazepine-2,5-dione scaffold, 30
CN1CCN(CCCN2C(=O)[C@H](c3ccc(Cl)cc3)N(Cc3ccc(Cl)cc3N)C(=O)c3cc(I)ccc32)CC1
C30H32Cl2IN5O2
692.429000
SZOYOLFYNBXVHW-NDEPHWFRSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31302; PubChem:CID44176182
Local ready
Direct docking supported
E3L001435
BDB001435
1,4-Benzodiazepine-2,5-dione scaffold, 32
CN1CCN(CCCCN2C(=O)[C@H](c3ccc(Cl)cc3)N(Cc3ccc(Cl)cc3N)C(=O)c3cc(I)ccc32)CC1
C31H34Cl2IN5O2
706.456000
MUHZTXDQFRVJAS-LJAQVGFWSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31303; PubChem:CID44176183
Local ready
Direct docking supported
E3L001436
BDB001436
BDBM31305
C[C@H](c1ccc(Cl)cc1)N1C(=O)c2cc(I)ccc2N(CCCCC(=O)O)C(=O)[C@@H]1c1ccc(Cl)cc1
C28H25Cl2IN2O4
651.328000
VLOPNYYNACVDTC-QUGAMOGWSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31305; PubChem:CID11952815
Local ready
Direct docking supported
E3L001437
BDB001437
1,4-Benzodiazepine-2,5-dione, 12c
C[C@H](c1ccc(Cl)cc1)N1C(=O)c2cc(I)ccc2N(CCN2CCOCC2)C(=O)[C@@H]1c1ccc(Cl)cc1
C29H28Cl2IN3O3
664.371000
ATPRYWVAPFXDLB-WINIVTDRSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31306; PubChem:CID21060012
Local ready
Direct docking supported
E3L001438
BDB001438
1,4-Benzodiazepine-2,5-dione, 12d
C[C@H](c1ccc(Cl)cc1)N1C(=O)c2cc(I)ccc2N(CCN2CCOCC2)C(=O)[C@H]1c1ccc(Cl)cc1
C29H28Cl2IN3O3
664.371000
ATPRYWVAPFXDLB-XHCCPWGMSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31307; PubChem:CID21060006
Local ready
Direct docking supported
E3L001439
BDB001439
1,4-Benzodiazepine-2,5-dione, 12f
C[C@@H](c1ccc(Cl)cc1N)N1C(=O)c2cc(I)ccc2N(CCN2CCOCC2)C(=O)[C@H]1c1ccc(Cl)cc1
C29H29Cl2IN4O3
679.386000
TXTIZPFXYRRDES-XRHLQHRESA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31309; PubChem:CID11952784
Local ready
Direct docking supported
E3L001440
BDB001440
1,4-Benzodiazepine-2,5-dione, 12g
COCCOCCN1C(=O)[C@H](c2ccc(Cl)cc2)N([C@H](C)c2ccc(Cl)cc2)C(=O)c2cc(I)ccc21
C28H27Cl2IN2O4
653.344000
MDTAPSOLFJDBQB-DWXRJYCRSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31310; PubChem:CID21060010
Local ready
Direct docking supported