E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L001381
BDB001381
Isoindolinone scaffold, 38
CN(CCOC1(c2ccccc2)c2ccccc2C(=O)N1Cc1ccccc1)c1ccc(C=O)cc1
C31H28N2O3
476.576000
YQKMCTUAVWARPA-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31249; PubChem:CID16090397
Local ready
Direct docking supported
E3L001382
BDB001382
Isoindolinone scaffold, 39
Cc1ccc([N+](=O)[O-])c(COC2(c3ccccc3)c3ccccc3C(=O)N2Cc2ccccc2)c1
C29H24N2O4
464.521000
ALSIMOQTEVUCJZ-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31250; PubChem:CID16090446
Local ready
Direct docking supported
E3L001383
BDB001383
Isoindolinone scaffold, 40
COc1cc(COC2(c3ccccc3)c3ccccc3C(=O)N2Cc2ccccc2)cc(OC)c1O
C30H27NO5
481.548000
MGACPMHHENLBAT-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31251; PubChem:CID16090398
Local ready
Direct docking supported
E3L001384
BDB001384
BDBM31252
O=C1c2ccccc2C(OCCS(=O)(=O)O)(c2ccccc2)N1Cc1ccccc1
C23H21NO5S
423.490000
CBNHBFFDFKFSFQ-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31252; PubChem:CID16090400
Local ready
Direct docking supported
E3L001385
BDB001385
Isoindolinone scaffold, 43
COc1ccc([C@@H](O)COC2(c3ccccc3)c3ccccc3C(=O)N2CCCO)cc1
C26H27NO5
433.504000
ZNAMHLZEYQNLAS-QSAPEBAKSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31253; PubChem:CID44176165
Local ready
Direct docking supported
E3L001386
BDB001386
Isoindolinone scaffold, 44
COCCOC1(c2ccccc2)c2ccccc2C(=O)N1Cc1ccccc1
C24H23NO3
373.452000
DPSNOOUMCDGRBU-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31254; PubChem:CID16090401
Local ready
Direct docking supported
E3L001387
BDB001387
Isoindolinone scaffold, 45
COC(=O)COC1(c2ccccc2)c2ccccc2C(=O)N1Cc1ccccc1
C24H21NO4
387.435000
GSVNLBVXINDLKO-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31255; PubChem:CID16090448
Local ready
Direct docking supported
E3L001388
BDB001388
Isoindolinone scaffold, 47
COc1ccc([C@@H](O)COC2(c3ccccc3)c3ccccc3C(=O)N2Cc2ccco2)cc1
C28H25NO5
455.510000
PJTZJMPUXKOJIO-QODXOHEASA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31256; PubChem:CID44176166
Local ready
Direct docking supported
E3L001389
BDB001389
Isoindolinone scaffold, 48
CCCOC1(c2ccccc2)c2ccccc2C(=O)N1Cc1ccc(OC)cc1
C25H25NO3
387.479000
HNSYOOWGSDYYBO-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31257; PubChem:CID16090449
Local ready
Direct docking supported
E3L001390
BDB001390
Isoindolinone scaffold, 49
COC(=O)C(Cc1ccc(O)cc1)N1C(=O)c2ccccc2C1(OCCN(CCC#N)c1ccccc1)c1ccccc1
C35H33N3O5
575.665000
YTCHTPPDEKTOLR-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31258; PubChem:CID16090403
Local ready
Direct docking supported
E3L001391
BDB001391
Isoindolinone scaffold, 50
COC(=O)C(Cc1ccc(O)cc1)N1C(=O)c2ccccc2C1(OCCn1c([N+](=O)[O-])cnc1C)c1ccccc1
C30H28N4O7
556.575000
JUXQVALHKFYTBT-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31259; PubChem:CID16090450
Local ready
Direct docking supported
E3L001392
BDB001392
Isoindolinone scaffold, 51
COC(=O)C(Cc1ccc(O)cc1)N1C(=O)c2ccccc2C1(OCCOC(C)=O)c1ccccc1
C28H27NO7
489.524000
MSQTYHXFRRJCHE-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31260; PubChem:CID16090404
Local ready
Direct docking supported
E3L001393
BDB001393
Isoindolinone scaffold, 53
CCCOC1(c2ccccc2)c2ccccc2C(=O)N1CCO
C19H21NO3
311.381000
PBXRUCOSQQNYJL-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31261; PubChem:CID16090405
Local ready
Direct docking supported
E3L001394
BDB001394
Isoindolinone scaffold, 57
CCCOC1(c2ccccc2)c2ccccc2C(=O)N1CCCC(OC)OC
C23H29NO4
383.488000
NLWIVDJZADRRGV-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31262; PubChem:CID16090453
Local ready
Direct docking supported
E3L001395
BDB001395
Isoindolinone scaffold, 58
CCCN1C(=O)c2ccccc2C1(OCCS(C)(=O)=O)c1ccc(C(C)(C)C)cc1
C24H31NO4S
429.582000
FUCPPAKPLNRFRW-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31263; PubChem:CID16090408
Local ready
Direct docking supported
E3L001396
BDB001396
Isoindolinone scaffold, 59
CCCN1C(=O)c2ccccc2C1(OCCNC(=O)c1ccccc1O)c1ccc(C(C)(C)C)cc1
C30H34N2O4
486.612000
MEWMUCHHODRMAC-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31264; PubChem:CID16090454
Local ready
Direct docking supported
E3L001397
BDB001397
Isoindolinone scaffold, 60
CCCN1C(=O)c2ccccc2C1(OCc1cc2c(cc1[N+](=O)[O-])OCO2)c1ccc(C(C)(C)C)cc1
C29H30N2O6
502.567000
KCHCPTJMORMXJX-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31265; PubChem:CID16090409
Local ready
Direct docking supported
E3L001398
BDB001398
Isoindolinone scaffold, 61
CCCN1C(=O)c2ccccc2C1(OCCc1ccc(O)cc1)c1ccc(C(C)(C)C)cc1
C29H33NO3
443.587000
YRTWFZJSFHBPMW-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31266; PubChem:CID16090455
Local ready
Direct docking supported
E3L001399
BDB001399
Isoindolinone scaffold, 62
CCCN1C(=O)c2ccccc2C1(OCCN1CCNC1=O)c1ccc(C(C)(C)C)cc1
C26H33N3O3
435.568000
AVSYNNLCEUXTGB-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31267; PubChem:CID16090410
Local ready
Direct docking supported
E3L001400
BDB001400
Isoindolinone scaffold, 63
CCCN1C(=O)c2ccccc2C1(OCc1[nH]cnc1C)c1ccc(C(C)(C)C)cc1
C26H31N3O2
417.553000
PNNAWUIWZKMLQK-UHFFFAOYSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB, PubChem
BindingDB:BDBM31268; PubChem:CID16090456
Local ready
Direct docking supported