E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L025601
BDB025601
WO2022104345, Example S29
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2ccc[nH]2)nn1
C17H24N6O3
360.418000
TTYOVGIPQZXTND-UGFHNGPFSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552761; PubChem:CID163303091
Local ready
Direct docking supported
E3L025602
BDB025602
WO2022104345, Example S30
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2ncco2)nn1
C16H22N6O4
362.390000
KGNDGBOIMKEFAS-WXHSDQCUSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552762; PubChem:CID163302882
Local ready
Direct docking supported
E3L025603
BDB025603
WO2022104345, Example S31
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2nccs2)nn1
C16H22N6O3S
378.458000
XYOKCPHKGSVLSS-WXHSDQCUSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552763; PubChem:CID163302889
Local ready
Direct docking supported
E3L025604
BDB025604
WO2022104345, Example S32
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2cnco2)nn1
C16H22N6O4
362.390000
UPBAGMWPAUBIKA-OSMZGAPFSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552764; PubChem:CID163303030
Local ready
Direct docking supported
E3L025605
BDB025605
WO2022104345, Example S33
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2cncs2)nn1
C16H22N6O3S
378.458000
NZISDAFCCXRENF-OSMZGAPFSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552765; PubChem:CID163302841
Local ready
Direct docking supported
E3L025606
BDB025606
WO2022104345, Example S34
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2ccccc2)nn1
C19H25N5O3
371.441000
SUDMCHPHEYNCPS-PVAVHDDUSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552766; PubChem:CID163302986
Local ready
Direct docking supported
E3L025607
BDB025607
WO2022104345, Example S35
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2ccccn2)nn1
C18H24N6O3
372.429000
MCQLPHKYPHNNQE-KCXAZCMYSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552767; PubChem:CID163303090
Local ready
Direct docking supported
E3L025608
BDB025608
WO2022104345, Example S36
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2cccnc2)nn1
C18H24N6O3
372.429000
HFLUMOMQFJLOKJ-KBMXLJTQSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552768; PubChem:CID163303046
Local ready
Direct docking supported
E3L025609
BDB025609
WO2022104345, Example S37
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2ccncc2)nn1
C18H24N6O3
372.429000
XIGGYJUFYREUCX-KBMXLJTQSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552769; PubChem:CID163303080
Local ready
Direct docking supported
E3L025610
BDB025610
WO2022104345, Example S38
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2ncccn2)nn1
C17H23N7O3
373.417000
RQEYCHHDLXLZQO-XBFCOCLRSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552770; PubChem:CID163302952
Local ready
Direct docking supported
E3L025611
BDB025611
WO2022104345, Example S39
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2cncnc2)nn1
C17H23N7O3
373.417000
LUENXMNBFLUYGC-SNPRPXQTSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552771; PubChem:CID163302964
Local ready
Direct docking supported
E3L025612
BDB025612
WO2022104345, Example S40
CNC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@H](C(C)C)n1cc(-c2ccc(Cl)s2)nn1
C17H22ClN5O3S
411.915000
FYJXHUKFHAJKCG-GMXABZIVSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552772; PubChem:CID163302918
Local ready
Direct docking supported
E3L025613
BDB025613
WO2022104345, Example S41
CC(C)[C@@H](C(=O)N1C[C@H](O)C[C@H]1C(=O)N(C)C)n1cc(C2CC2)nn1
C17H27N5O3
349.435000
IREYUUVYXTYPFM-SNPRPXQTSA-N P40337 von Hippel-Lindau disease tumor suppressor
BindingDB, PubChem
BindingDB:BDBM552773; PubChem:CID163303085
Local ready
Direct docking supported
E3L025614
BDB025614
US11319299, Example 1
Cc1cc(C(=O)Nc2cc(-c3cccc(CN4CCOCC4)c3)c(F)cc2N2CCN(C)CC2)cc(C)c1F
C31H36F2N4O2
534.651000
PXTYRLCEWAUNKF-UHFFFAOYSA-N P61964, Q03164, Q15291, Q969U6 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM552932; PubChem:CID137376792
Local ready
Direct docking supported
E3L025615
BDB025615
BDBM552933
CN1CCN(c2cc(F)c(-c3cccc(CN4CCOCC4)c3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C29H31F4N5O3
573.591000
GVIBWIRSZYKTTI-UHFFFAOYSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552933; PubChem:CID138541799
Local ready
Direct docking supported
E3L025616
BDB025616
BDBM552948
CN1CCN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C26H27F4N7O3
561.540000
QNEXYXLSJZBQJZ-UHFFFAOYSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552948; PubChem:CID137377298
Local ready
Direct docking supported
E3L025617
BDB025617
BDBM552949
CN1CCN(c2cc(F)c(-c3ccc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C27H28F4N6O3
560.552000
IDXURNUKWGSUOE-UHFFFAOYSA-N P61964, Q03164, Q15291, Q969U6 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM552949; PubChem:CID138541640
Local ready
Direct docking supported
E3L025618
BDB025618
BDBM552950
CN1CCN(c2cc(F)c(-c3ccc4c(c3)OCO4)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C25H22F4N4O4
518.467000
WOROKLNMCVXIBS-UHFFFAOYSA-N P61964, Q03164, Q15291, Q969U6 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM552950; PubChem:CID137376965
Local ready
Direct docking supported
E3L025619
BDB025619
BDBM552951
C[C@@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C
C27H29F4N7O3
575.567000
RWMJXLQEZZOCBN-MRXNPFEDSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552951; PubChem:CID138541752
Local ready
Direct docking supported
E3L025620
BDB025620
BDBM552952
C[C@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C
C27H29F4N7O3
575.567000
RWMJXLQEZZOCBN-INIZCTEOSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552952; PubChem:CID138541704
Local ready
Direct docking supported