E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L025641
BDB025641
US10669234, Example 28
N#CN1CC(F)(F)C[C@H]1C(=O)N1CCc2c(-c3c[nH]nc3C(F)(F)F)cccc21
C18H14F5N5O
411.334000
BHILSXATFZMXGG-AWEZNQCLSA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM552973; PubChem:CID135205478
Local ready
Direct docking supported
E3L025642
BDB025642
(2S,4S)-4-fluoro-2-(4-(5-
N#CN1CC(F)C[C@H]1C(=O)N1CCc2c(-c3c[nH]nc3C(F)(F)F)cccc21
C18H15F4N5O
393.344000
AHCBJXSHVXHGHF-WRXSAAJRSA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM552974; PubChem:CID164607828
Local ready
Direct docking supported
E3L025643
BDB025643
US11319299, Example 27
CC(=O)Nc1cc(C(F)(F)F)c(C(=O)Nc2cc(-c3cnc(N4CCOCC4)nc3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)cn1
C30H34F4N8O3
630.647000
WEPWHMCRXBMMJW-HDICACEKSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552976; PubChem:CID138542084
Local ready
Direct docking supported
E3L025644
BDB025644
US11319299, Example 28
Cc1cc(C(=O)Nc2cc(-c3cnc(N4CCOCC4)nc3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)cc(C)c1F
C30H36F2N6O2
550.654000
HZHCCOARFZTFNJ-OYRHEFFESA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552977; PubChem:CID137377101
Local ready
Direct docking supported
E3L025645
BDB025645
BDBM552978
C[C@@H]1CN(c2cc(F)c(-c3ccc(N4CCOCC4)cc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C30H33F4N5O3
587.618000
RERINPGTUQBMDR-KDURUIRLSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552978; PubChem:CID137377246
Local ready
Direct docking supported
E3L025646
BDB025646
US11319287, Example 34
N#CN1CCC[C@H]1C(=O)N1Cc2cccc(-c3ccccn3)c2C1
C19H18N4O
318.380000
JFHMYQLJHAVTGE-SFHVURJKSA-N P09936 Ubiquitin carboxyl-terminal hydrolase isozyme L1
BindingDB, PubChem
BindingDB:BDBM552979; PubChem:CID164607830
Local ready
Direct docking supported
E3L025647
BDB025647
BDBM552980
CN1CCN(c2cc(F)c(-c3ccc(OC4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C28H29F4N5O4
575.563000
ZXNZFLDTEWCDMC-UHFFFAOYSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552980; PubChem:CID137376979
Local ready
Direct docking supported
E3L025648
BDB025648
BDBM552981
C[C@@H]1CN(c2cc(F)c(-c3cnc(C#N)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C25H23F4N7O2
529.498000
QCTQIUVBBPESJQ-OKILXGFUSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552981; PubChem:CID137376874
Local ready
Direct docking supported
E3L025649
BDB025649
BDBM552982
C[C@@H]1CN(c2cc(F)c(-c3ccc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C29H32F4N6O3
588.606000
GBEYGHHOGZXQCC-HDICACEKSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552982; PubChem:CID137376919
Local ready
Direct docking supported
E3L025650
BDB025650
BDBM552983
Cc1ncc(-c2cc(NC(=O)c3c[nH]c(=O)cc3C(F)(F)F)c(N3C[C@@H](C)N(C)[C@@H](C)C3)cc2F)cn1
C25H26F4N6O2
518.515000
NSDXRTZOEXSSPU-OKILXGFUSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552983; PubChem:CID138541623
Local ready
Direct docking supported
E3L025651
BDB025651
BDBM552984
C[C@@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)F)C[C@H](C)N1C
C28H32F3N7O3
571.604000
UUCBZFVZRYUNFK-CALCHBBNSA-N P61964, Q03164, Q15291, Q969U6 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM552984; PubChem:CID138541650
Local ready
Direct docking supported
E3L025652
BDB025652
BDBM552985
C[C@@H]1CN(c2cc(F)c(-c3cccnc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C25H25F4N5O2
503.500000
PWIXTNXPOYAMKW-GASCZTMLSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552985; PubChem:CID137377131
Local ready
Direct docking supported
E3L025653
BDB025653
BDBM552986
C[C@@H]1CN(c2cc(F)c(-c3ccncc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C25H25F4N5O2
503.500000
AKYZOYQVCPKNMI-GASCZTMLSA-N P61964, Q03164, Q15291, Q969U6 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM552986; PubChem:CID137377650
Local ready
Direct docking supported
E3L025654
BDB025654
BDBM552987
CN(C)[C@@H]1CCN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C1
C27H29F4N7O3
575.567000
ZIWKHOHCZXDNQD-QGZVFWFLSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552987; PubChem:CID137377658
Local ready
Direct docking supported
E3L025655
BDB025655
BDBM552988
CN(C)[C@H]1CCN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C1
C27H29F4N7O3
575.567000
ZIWKHOHCZXDNQD-KRWDZBQOSA-N P61964, Q03164, Q15291, Q969U6 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM552988; PubChem:CID137377699
Local ready
Direct docking supported
E3L025656
BDB025656
BDBM552989
C[C@@H]1CN(c2cc(F)c(-c3ccc(OCC4CC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C29H31F4N5O3
573.591000
RSDNMYGQEMFEDV-CALCHBBNSA-N P61964, Q03164, Q15291, Q969U6 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM552989; PubChem:CID137377152
Local ready
Direct docking supported
E3L025657
BDB025657
BDBM552990
CN1CCN(c2cc(F)c(-c3cnc(N(C)C)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C24H25F4N7O2
519.503000
ZHYKLPAWOLFHNY-UHFFFAOYSA-N P61964, Q03164, Q15291, Q969U6 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552990; PubChem:CID137377055
Local ready
Direct docking supported
E3L025658
BDB025658
BDBM552991
CN1CCN(c2cc(F)c(-c3ccc(CN4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C28H30F4N6O3
574.579000
VJABKHXVGPQFCN-UHFFFAOYSA-N P61964, Q03164, Q15291, Q969U6 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM552991; PubChem:CID138542206
Local ready
Direct docking supported
E3L025659
BDB025659
US11319299, Example 42
C[C@@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]nc2C(F)(F)F)C[C@H](C)N1C
C26H30F4N8O2
562.572000
WALRNPLEOSYAFU-IYBDPMFKSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM552992; PubChem:CID137377675
Local ready
Direct docking supported
E3L025660
BDB025660
BDBM552994
CN1CCN(c2cc(F)c(-c3cccc(CNC4CCCC4)c3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
C30H33F4N5O2
571.619000
MKLAJKBTIBKWMV-UHFFFAOYSA-N P61964, Q03164, Q15291, Q969U6 WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A
BindingDB, PubChem
BindingDB:BDBM552994; PubChem:CID138541761
Local ready
Direct docking supported