E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L025681
BDB025681
BDBM553017
C[C@@H]1CN(c2cc(F)c(-c3ccccc3CNC3CCCCC3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C33H39F4N5O2
613.700000
DOWBJCUBXZCNSP-OYRHEFFESA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553017; PubChem:CID137377133
Local ready
Direct docking supported
E3L025682
BDB025682
BDBM553018
C[C@@H]1CN(c2cc(F)c(-c3ccc(N4CCOCC4)c(Cl)c3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C30H32ClF4N5O3
622.063000
KIZDGKNHFTXPDB-HDICACEKSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553018; PubChem:CID138541758
Local ready
Direct docking supported
E3L025683
BDB025683
BDBM553019
C[C@@H]1CN(c2cc(F)c(-c3ccc4c(c3)OCCCO4)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C29H30F4N4O4
574.575000
AAPWIOPMOZQGGE-CALCHBBNSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553019; PubChem:CID137377467
Local ready
Direct docking supported
E3L025684
BDB025684
BDBM553020
C[C@@H]1CN(c2cc(F)c(-c3ccc4c(c3)OCCO4)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C28H28F4N4O4
560.548000
PMILOYMEECYYHG-IYBDPMFKSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553020; PubChem:CID137377331
Local ready
Direct docking supported
E3L025685
BDB025685
BDBM553021
C[C@@H]1CN(c2cc(F)c(-c3ccc4c(c3)OCCN4C)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C29H31F4N5O3
573.591000
OGUZNJZPGSOQKS-CALCHBBNSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553021; PubChem:CID137377147
Local ready
Direct docking supported
E3L025686
BDB025686
BDBM553022
CC(=O)Nc1ncc(-c2cc(NC(=O)c3c[nH]c(=O)cc3C(F)(F)F)c(N3C[C@@H](C)N(C)[C@@H](C)C3)cc2F)cn1
C26H27F4N7O3
561.540000
ATFVPIUNMCLDAN-OKILXGFUSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553022; PubChem:CID137376861
Local ready
Direct docking supported
E3L025687
BDB025687
BDBM553023
C[C@@H]1CN(c2cc(F)c(C3=CCN(c4ccccc4)CC3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C31H33F4N5O2
583.630000
FYMCERWZOQSQCY-BGYRXZFFSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553023; PubChem:CID137377038
Local ready
Direct docking supported
E3L025688
BDB025688
US11319299, Example 74
C[C@@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2ccccc2)C[C@H](C)N1C
C28H33FN6O2
504.610000
YQFNSMANDGRLTE-BGYRXZFFSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553024; PubChem:CID138541780
Local ready
Direct docking supported
E3L025689
BDB025689
US11319299, Example 75
COc1cc(C(=O)Nc2cc(-c3cnc(N4CCOCC4)nc3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)ccc1F
C29H34F2N6O3
552.626000
AUTAOAUKUDQTNY-KDURUIRLSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553025; PubChem:CID137377106
Local ready
Direct docking supported
E3L025690
BDB025690
US11319299, Example 76
C[C@@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2cc(Cl)cc(Cl)c2)C[C@H](C)N1C
C28H31Cl2FN6O2
573.500000
FULWLPHLUKCSAQ-HDICACEKSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553026; PubChem:CID138541616
Local ready
Direct docking supported
E3L025691
BDB025691
BDBM553027
C[C@@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2n[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C27H30F4N8O3
590.582000
PMAHAUJNAUMCQM-IYBDPMFKSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553027; PubChem:CID138542247
Local ready
Direct docking supported
E3L025692
BDB025692
US11319299, Example 78
C[C@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2ccccc2)CCN1C
C27H31FN6O2
490.583000
LXSJNAPOPPRPNG-IBGZPJMESA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553028; PubChem:CID137377400
Local ready
Direct docking supported
E3L025693
BDB025693
US11319299, Example 79
C[C@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2ccco2)CCN1C
C25H29FN6O3
480.544000
MBGVGLVZOTWFQD-KRWDZBQOSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553029; PubChem:CID138551477
Local ready
Direct docking supported
E3L025694
BDB025694
US11319299, Example 80
C[C@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2cccnc2)CCN1C
C26H30FN7O2
491.571000
BDGULTBESBEFNG-SFHVURJKSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553030; PubChem:CID138551357
Local ready
Direct docking supported
E3L025695
BDB025695
BDBM553031
C[C@H]1CN(c2cc(Cl)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C
C27H29ClF3N7O3
592.022000
YZFDGWNJUAATSX-INIZCTEOSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553031; PubChem:CID138542157
Local ready
Direct docking supported
E3L025696
BDB025696
BDBM553032
C[C@@H]1CN(c2cc(Cl)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C28H31ClF3N7O3
606.049000
VNGRFFKEZVSXII-CALCHBBNSA-N P61964, Q03164 Histone-lysine N-methyltransferase 2A, WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553032; PubChem:CID138542434
Local ready
Direct docking supported
E3L025697
BDB025697
BDBM553033
C[C@@H]1CN(c2cc(F)c(-c3ccnc(N4CCOCC4)c3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C29H32F4N6O3
588.606000
NYAACKWLBHJNBA-HDICACEKSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553033; PubChem:CID138542314
Local ready
Direct docking supported
E3L025698
BDB025698
BDBM553034
COCCOc1ccc(-c2cc(NC(=O)c3c[nH]c(=O)cc3C(F)(F)F)c(N3C[C@@H](C)N(C)[C@@H](C)C3)cc2F)cn1
C28H31F4N5O4
577.579000
WFYDFTZAPYMEJP-CALCHBBNSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553034; PubChem:CID137376837
Local ready
Direct docking supported
E3L025699
BDB025699
BDBM553035
C[C@@H]1CN(c2cc(F)c(-c3cccc(N4CCOCC4)c3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
C30H33F4N5O3
587.618000
HWVQJAYZVYUVEY-KDURUIRLSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553035; PubChem:CID138541696
Local ready
Direct docking supported
E3L025700
BDB025700
US11319299, Example 86
COc1ccccc1C(=O)Nc1cc(-c2cnc(N3CCOCC3)nc2)c(F)cc1N1C[C@@H](C)N(C)[C@@H](C)C1
C29H35FN6O3
534.636000
KWCHDMIGMKTOPV-BGYRXZFFSA-N P61964 WD repeat-containing protein 5
BindingDB, PubChem
BindingDB:BDBM553036; PubChem:CID137377514
Local ready
Direct docking supported