E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003981
BDB003981
US20250388593, Example 213
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(CCC(=O)OC(C)(C)C)c21
C21H27N3O5
401.463000
YFMYPKWDAAKLOK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88640; PubChem:CID171844166
Local ready
Direct docking supported
E3L003982
BDB003982
US20250388593, Example 214
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(CCCCC(=O)OC(C)(C)C)c21
C23H31N3O5
429.517000
DSMLRTCVSBPJTE-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88641; PubChem:CID175638720
Local ready
Direct docking supported
E3L003983
BDB003983
US20250388593, Example 215
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2ccc(C#CCCCCCC(=O)OC(C)(C)C)cc21
C26H33N3O5
467.566000
PATVSAKEELVHBO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88642; PubChem:CID175638724
Local ready
Direct docking supported
E3L003984
BDB003984
US20250388593, Example 216
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2ccc(CCCCCCCC(=O)OC(C)(C)C)cc21
C26H37N3O5
471.598000
AWUXGNWQMCKSFH-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88643; PubChem:CID175638725
Local ready
Direct docking supported
E3L003985
BDB003985
US20250388593, Example 217
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2ccc(CCCCC(=O)OC(C)(C)C)cc21
C23H31N3O5
429.517000
ILXVOACYTGKRNW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88644; PubChem:CID175638726
Local ready
Direct docking supported
E3L003986
BDB003986
US20250388593, Example 218
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2ccc(C3CCN(C(=O)OC(C)(C)C)CC3)cc21
C24H32N4O5
456.543000
TUGYNVKDXZIADZ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88645; PubChem:CID171844091
Local ready
Direct docking supported
E3L003987
BDB003987
US20250388593, Example 219
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2ccc(C3CCN(CC(=O)OC(C)(C)C)CC3)cc21
C25H34N4O5
470.570000
OJQDZJWQQFRSRX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88646; PubChem:CID171844054
Local ready
Direct docking supported
E3L003988
BDB003988
US20250388593, Example 220
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(C3=CCN(C(=O)OC(C)(C)C)CC3)c21
C24H30N4O5
454.527000
BSYPHYPDQCQAGM-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88682; PubChem:CID171844116
Local ready
Direct docking supported
E3L003989
BDB003989
BDBM89212
[C]Oc1cc([C][C]c2ccccc2)c(C([O])=O)c([O])c1[C]/[C]=C(/[C])[C][C][C]=C([C])[C]
C26H6O4
382.330000
AOFZKACZCBVRHL-UHFFFAOYSA-N P37231 Peroxisome proliferator-activated receptor gamma
BindingDB
BindingDB:BDBM89212
Local ready
Direct docking supported
E3L003990
BDB003990
1-(3,4-Dichlorobenzyl)-4,6-dimethyl-isatin
Cc1cc(C)c2c(c1)N(Cc1ccc(Cl)c(Cl)c1)C(=O)C2=O
C17H13Cl2NO2
334.202000
YLTIMTDAACDJAV-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89226; PubChem:CID53389328
Local ready
Direct docking supported
E3L003991
BDB003991
6-Chloro-1-(3,4-dichlorobenzyl)isatin
O=C1C(=O)N(Cc2ccc(Cl)c(Cl)c2)c2cc(Cl)ccc21
C15H8Cl3NO2
340.593000
MOYGLYKQDFJZQO-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89227; PubChem:CID53389327
Local ready
Direct docking supported
E3L003992
BDB003992
BDBM89489
Cc1nn(CC(C)C(=O)O)c(C)c1Br
C9H13BrN2O2
261.119000
BZLIXBYMKOSUCJ-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89489; PubChem:CID6457554
Local ready
Direct docking supported
E3L003993
BDB003993
3-(3,5-Dimethyl-1-pyrazolyl)-2-methylbutanoic acid
Cc1cc(C)n(C(C)C(C)C(=O)O)n1
C10H16N2O2
196.250000
PUWWRVCWHZQCNL-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89490; PubChem:CID45596943
Local ready
Direct docking supported
E3L003994
BDB003994
2-methyl-3-(1H-pyrazol-1-yl)propanoic acid
CC(Cn1cccn1)C(=O)O
C7H10N2O2
154.169000
FWIFKSTVTRTEQU-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89491; PubChem:CID6483897
Local ready
Direct docking supported
E3L003995
BDB003995
BDBM89492
COc1cc(OC)c(C2=NOC(C(=O)O)C2)cc1Cl
C12H12ClNO5
285.683000
IDRVXUULWFWTEI-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89492; PubChem:CID2974597
Local ready
Direct docking supported
E3L003996
BDB003996
BDBM89493
O=C(O)C1CC(c2ccccc2O)=NO1
C10H9NO4
207.185000
FRDPLMQZUFGNIK-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89493; PubChem:CID2962281
Local ready
Direct docking supported
E3L003997
BDB003997
BDBM89494
O=C(O)C1CC(c2ccccc2Cl)=NO1
C10H8ClNO3
225.631000
XBABASIBBODKAE-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89494; PubChem:CID2962259
Local ready
Direct docking supported
E3L003998
BDB003998
BDBM89495
O=C(O)C1CC(c2cccc(Br)c2)=NO1
C10H8BrNO3
270.082000
PPLKIMIGZSEKTE-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89495; PubChem:CID2962252
Local ready
Direct docking supported
E3L003999
BDB003999
BDBM89496
O=C(O)C1CC(c2c(F)cccc2Cl)=NO1
C10H7ClFNO3
243.621000
KIWWDOKNJZYHSY-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89496; PubChem:CID2962193
Local ready
Direct docking supported
E3L004000
BDB004000
BDBM89497
COc1ccc(OC)c(C2=NOC(C(=O)O)C2)c1
C12H13NO5
251.238000
TVKIPMFFMHSWBP-UHFFFAOYSA-N O14727 Apoptotic protease-activating factor 1
BindingDB, PubChem
BindingDB:BDBM89497; PubChem:CID25220803
Local ready
Direct docking supported