E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003961
BDB003961
US20250388593, Example 188
COc1ccc2sc(N3CCC4(CCCC(=O)NC4=O)C3)nc2c1
C17H19N3O3S
345.424000
FTXBZZGJMZYDPX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88620; PubChem:CID175638827
Local ready
Direct docking supported
E3L003962
BDB003962
US20250388593, Example 189
COc1cccc2sc(N3CCC4(CCCC(=O)NC4=O)C3)nc12
C17H19N3O3S
345.424000
ADQAQIADMURXSX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88621; PubChem:CID177778484
Local ready
Direct docking supported
E3L003963
BDB003963
US20250388593, Example 190
CC(C)(C)OC(=O)N1CCc2c(ncnc2N2CCC3(CCCC(=O)NC3=O)C2)C1
C21H29N5O4
415.494000
NWKFMOURUWMWBD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88622; PubChem:CID175638829
Local ready
Direct docking supported
E3L003964
BDB003964
US20250388593, Example 149
CC(C)(C)OC(=O)COc1ccccc1-c1cn(C2CCCC(=O)NC2=O)nn1
C20H24N4O5
400.435000
VEQCCCXPTJKADU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88623; PubChem:CID171844060
Local ready
Direct docking supported
E3L003965
BDB003965
US20250388593, Example 192
COc1ccc(C#N)c(N2CCC3(CCCC(=O)NC3=O)C2)c1
C17H19N3O3
313.357000
GDUAVMBMCPGAQU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88624; PubChem:CID178289691
Local ready
Direct docking supported
E3L003966
BDB003966
US20250388593, Example 193
CC(C)(C)OC(=O)COc1ccc(C#N)c(N2CCC3(CCCC(=O)NC3=O)C2)c1
C22H27N3O5
413.474000
DVQKNFCCPYVUDL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88625; PubChem:CID177778588
Local ready
Direct docking supported
E3L003967
BDB003967
US20250388593, Example 194
CC(C)(C)OC(=O)CCCCCCCCCOc1ccc(C#N)c(N2CCC3(CCCC(=O)NC3=O)C2)c1
C30H43N3O5
525.690000
AHEPBFHELXHSDI-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88626; PubChem:CID178289692
Local ready
Direct docking supported
E3L003968
BDB003968
US20250388593, Example 195
CC(C)(C)OC(=O)CCCCCCCn1c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
C25H35N3O5
457.571000
RVHQTWFOORQKIY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88627; PubChem:CID175638675
Local ready
Direct docking supported
E3L003969
BDB003969
US20250388593, Example 196
CC(C)(C)OC(=O)NCCCn1c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
C21H28N4O5
416.478000
KLPCWRGHWFJFFD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88628; PubChem:CID171844121
Local ready
Direct docking supported
E3L003970
BDB003970
US20250388593, Example 197
CC(C)(C)OC(=O)NCCn1c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
C20H26N4O5
402.451000
JDLCLGLNJIICNC-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88629; PubChem:CID171843940
Local ready
Direct docking supported
E3L003971
BDB003971
US20250388593, Example 198
CC(C)(C)OC(=O)NCCCCCCCn1c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
C25H36N4O5
472.586000
UDSKZJIPLUMMOQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88630; PubChem:CID177778501
Local ready
Direct docking supported
E3L003972
BDB003972
US20250388593, Example 199
CC(C)(C)OC(=O)NCCOCCOCCn1c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
C24H34N4O7
490.557000
QNBHRKZGWGPJEU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88631; PubChem:CID171844167
Local ready
Direct docking supported
E3L003973
BDB003973
3-(2-Oxoazepan-3-yl)-1H-imidazo[4,5-b]pyridin-2-one
O=C1NCCCCC1N1C(=O)NC2CC=CN=C21
C12H16N4O2
248.286000
JKBMBCWPSBVPJZ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88632; PubChem:CID178289693
Local ready
Direct docking supported
E3L003974
BDB003974
US20250388593, Example 202
Cc1ccc(NC(=O)NCCCn2c(=O)n(C3CCCC(=O)NC3=O)c3ccccc32)cc1Cl
C24H26ClN5O4
483.956000
ZHMREHCWAHCJMK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88633; PubChem:CID171843932
Local ready
Direct docking supported
E3L003975
BDB003975
US20250388593, Example 203
Cc1cc(NC(=O)NCCn2c(=O)n(C3CCCC(=O)NC3=O)c3ccccc32)ccc1Cl
C23H24ClN5O4
469.929000
UZRWHBWJPOPJLN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88634; PubChem:CID178289694
Local ready
Direct docking supported
E3L003976
BDB003976
US20250388593, Example 206
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(C#CCCCCCC(=O)OC(C)(C)C)c21
C26H33N3O5
467.566000
FMPBXMHJXLIWJM-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88635; PubChem:CID175638697
Local ready
Direct docking supported
E3L003977
BDB003977
US20250388593, Example 207
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(CCCCCCCC(=O)OC(C)(C)C)c21
C26H37N3O5
471.598000
GMMREYYISVKAKQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88636; PubChem:CID175638701
Local ready
Direct docking supported
E3L003978
BDB003978
US20250388593, Example 209
O=C(O)CCCCCCCc1nn(C2CCCC(=O)NC2=O)c2ccccc12
C21H27N3O4
385.464000
WELWTLFSJDLNKE-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88637; PubChem:CID175638709
Local ready
Direct docking supported
E3L003979
BDB003979
US20250388593, Example 210
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(I)c21
C14H14IN3O3
399.188000
UVRIXAXPLOQUCH-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88638; PubChem:CID171844158
Local ready
Direct docking supported
E3L003980
BDB003980
US20250388593, Example 211
Cn1c(=O)n([C@@H]2CCCC(=O)NC2=O)c2cccc(I)c21
C14H14IN3O3
399.188000
UVRIXAXPLOQUCH-SNVBAGLBSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88639; PubChem:CID178289695
Local ready
Direct docking supported