E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003921
BDB003921
US20250388593, Example 136
CC(C)(C)OC(=O)/C=C/c1nn(C2CCCC(=O)NC2=O)c2ccccc12
C20H23N3O4
369.421000
VDZUYXGWEODYRC-VAWYXSNFSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88578; PubChem:CID178289683
Local ready
Direct docking supported
E3L003922
BDB003922
BDBM88579
CC(C)(C)OC(=O)CCc1nn(C2CCCC(=O)NC2=O)c2ccccc12
C20H25N3O4
371.437000
DBLZWWDLFUMQOG-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88579; PubChem:CID178289684
Local ready
Direct docking supported
E3L003923
BDB003923
US20250388593, Example 138
CC(C)(C)OC(=O)Cn1c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
C19H23N3O5
373.409000
AMTBEDGVIMEHPO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88580; PubChem:CID171844144
Local ready
Direct docking supported
E3L003924
BDB003924
BDBM88581
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2ccc(Br)cc21
C14H14BrN3O3
352.188000
ZPSDFLOWLARGIU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88581; PubChem:CID171844142
Local ready
Direct docking supported
E3L003925
BDB003925
US20250388593, Example 140
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2ccc(/C=C/C(=O)OC(C)(C)C)cc21
C21H25N3O5
399.447000
ZIWBQOJPAYDCMO-PKNBQFBNSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88582; PubChem:CID178289685
Local ready
Direct docking supported
E3L003926
BDB003926
US20250388593, Example 141
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2ccc(CCC(=O)OC(C)(C)C)cc21
C21H27N3O5
401.463000
MBZPXUIIWSOTLI-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88583; PubChem:CID178289686
Local ready
Direct docking supported
E3L003927
BDB003927
US20250388593, Example 142
NC(=O)c1nn(-c2ccc(C(=O)NCCOCCOCCNC(=O)c3ccnc(N4CCC5(CCCC(=O)NC5=O)C4)c3)cc2)cc1NC(=O)c1coc(-c2ccnc(NCC3CC3)c2)n1
C45H50N12O9
902.970000
FYBLELBQGDYJRX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88584; PubChem:CID171843889
Local ready
Direct docking supported
E3L003928
BDB003928
US20250388593, Example 143
NC(=O)c1nn(-c2ccc(C(=O)NCCOCCOCCNC(=O)c3ccc(N4CCC5(CCCC(=O)NC5=O)CC4=O)nc3)cc2)cc1NC(=O)c1coc(-c2ccnc(NCC3CC3)c2)n1
C46H50N12O10
930.980000
NFCOSKFJMFPFAM-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88585; PubChem:CID177778562
Local ready
Direct docking supported
E3L003929
BDB003929
US20250388593, Example 144
NC(=O)c1nn(-c2ccc(C(=O)NCCOCCOCCNC(=O)CN3CCC4(CCCC(=O)NC4=O)CC3=O)cc2)cc1NC(=O)c1coc(-c2ccnc(NCC3CC3)c2)n1
C42H49N11O10
867.921000
IVPQWCMBAOAZKG-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88586; PubChem:CID175638644
Local ready
Direct docking supported
E3L003930
BDB003930
US20250388593, Example 147
CC(C)(C)OC(=O)NCCCCCCCc1cn(C2CCCC(=O)NC2=O)nn1
C20H33N5O4
407.515000
RVHOPIXMVPJGNR-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88588; PubChem:CID177778500
Local ready
Direct docking supported
E3L003931
BDB003931
US20250388593, Example 148
O=C1CCCC(n2cc(CCCCCCCC(=O)OCc3ccccc3)nn2)C(=O)N1
C23H30N4O4
426.517000
JNALMWPRMWEUMA-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88589; PubChem:CID177778530
Local ready
Direct docking supported
E3L003932
BDB003932
US20250388593, Example 149
CC(C)(C)OC(=O)COc1ccccc1-c1cn(C2CCCC(=O)NC2=O)nn1
C20H24N4O5
400.435000
VEQCCCXPTJKADU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88590; PubChem:CID171844060
Local ready
Direct docking supported
E3L003933
BDB003933
US20250388593, Example 150
CC(C)(C)OC(=O)NCCCCCCc1ccc(-c2cn(C3CCCC(=O)NC3=O)nn2)cc1
C25H35N5O4
469.586000
ZWYHDXDPZPRVGL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88591; PubChem:CID171843866
Local ready
Direct docking supported
E3L003934
BDB003934
US20250388593, Example 151
Cn1ccc2c(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cccc21
C19H21N3O3
339.395000
NBOHAJJESDZFSB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88592; PubChem:CID171844057
Local ready
Direct docking supported
E3L003935
BDB003935
US20250388593, Example 152
O=C1CCCC2(CCN(C(=O)c3ccc4scnc4c3)C2)C(=O)N1
C17H17N3O3S
343.408000
FIVVXONGENHMPW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88593; PubChem:CID175638871
Local ready
Direct docking supported
E3L003936
BDB003936
US20250388593, Example 153
O=C1CCCC2(CCN(C(=O)c3cnn4ccccc34)C2)C(=O)N1
C17H18N4O3
326.356000
LOHLEKZBJJGRFN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88594; PubChem:CID177778556
Local ready
Direct docking supported
E3L003937
BDB003937
US20250388593, Example 154
O=C1CCCC2(CCN(C(=O)c3nc4ccccc4o3)C2)C(=O)N1
C17H17N3O4
327.340000
MGQWJXIYXVJOQL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88595; PubChem:CID177778493
Local ready
Direct docking supported
E3L003938
BDB003938
US20250388593, Example 155
Nc1ccc(C(=O)N2CCC3(CCCC(=O)NC3=O)C2)cc1
C16H19N3O3
301.346000
PGGMUBGUAWPCQH-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88596; PubChem:CID177778514
Local ready
Direct docking supported
E3L003939
BDB003939
US20250388593, Example 156
Cc1ccc(NC(=O)NCc2ccccc2C(=O)N2CCC3(CCCC(=O)NC3=O)C2)cc1Cl
C25H27ClN4O4
482.968000
XYYGMEWJRDEWQX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88597; PubChem:CID177778606
Local ready
Direct docking supported
E3L003940
BDB003940
US20250388593, Example 157
Cc1ccc(NC(=O)NCc2ccc(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cc2)cc1Cl
C25H27ClN4O4
482.968000
SQZKJBKMSVVLRL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88598; PubChem:CID177778485
Local ready
Direct docking supported