E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003941
BDB003941
US20250388593, Example 158
CC(C)(C)OC(=O)NCCCCCCc1cccc(C(=O)N2CCC3(CCCC(=O)NC3=O)C2)c1
C27H39N3O5
485.625000
IGTUIZVALGZFOY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88599; PubChem:CID171843903
Local ready
Direct docking supported
E3L003942
BDB003942
US20250388593, Example 159
CC(C)(C)OC(=O)NCCCCCCc1ccccc1C(=O)N1CCC2(CCCC(=O)NC2=O)C1
C27H39N3O5
485.625000
OBENXTUAFFRQOL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88600; PubChem:CID175638820
Local ready
Direct docking supported
E3L003943
BDB003943
US20250388593, Example 160
CC(C)(C)OC(=O)NCCCCCCc1ccc(C(=O)N2CCC3(CCCC(=O)NC3=O)C2)cc1Cl
C27H38ClN3O5
520.070000
LUYCXUJLIJBSTP-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88601; PubChem:CID177778516
Local ready
Direct docking supported
E3L003944
BDB003944
US20250388593, Example 161
CC(C)(C)OC(=O)NCCCCCCc1cccc2c(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cccc12
C31H41N3O5
535.685000
LVAHAYMTMJYTSS-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88602; PubChem:CID177778574
Local ready
Direct docking supported
E3L003945
BDB003945
US20250388593, Example 162
CC(C)(C)OC(=O)NCCCCCCn1ccc2c(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cccc21
C29H40N4O5
524.662000
IZBCKSNPQCCAJK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88603; PubChem:CID171843921
Local ready
Direct docking supported
E3L003946
BDB003946
1-(3-Bromoanilino)-3-azabicyclo [3.2.2]nonane-2,4-dione
O=C1NC(=O)C2(NC3=CC(Br)CC=C3)CCC1CC2
C14H17BrN2O2
325.206000
SXHNETXEGZUDHH-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88605; PubChem:CID178289687
Local ready
Direct docking supported
E3L003947
BDB003947
1-(4-Bromophenyl)-3-azabicyclo [3.2.2]nonane-2,4-dione
O=C1NC(=O)C2(c3ccc(Br)cc3)CCC1CC2
C14H14BrNO2
308.175000
DTRCQKJSPGARRW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88606; PubChem:CID171843908
Local ready
Direct docking supported
E3L003948
BDB003948
US20250388593, Example 168-2
CC(C)(C)OC(=O)N1CC=C(c2cnc(N3CCC4(CCCC(=O)NC4=O)C3)nc2)CC1
C23H31N5O4
441.532000
VBDAMQPAHNTGTH-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88607; PubChem:CID171843992
Local ready
Direct docking supported
E3L003949
BDB003949
US20250388593, Example 173
O=C1NC(=O)C2(c3ccc(Br)cc3)CCC1O2
C12H10BrNO3
296.120000
RZLABNKXNMPBIF-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88608; PubChem:CID171843994
Local ready
Direct docking supported
E3L003950
BDB003950
US20250388593, Example 176
COC(=O)c1cc2c(N3CCC4(CCCC(=O)NC4=O)C3)ncnc2s1
C17H18N4O4S
374.422000
ZCLMZCSOLADXQB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88609; PubChem:CID177778513
Local ready
Direct docking supported
E3L003951
BDB003951
US20250388593, Example 177
N#Cc1cc([N+](=O)[O-])ccc1N1CCC2(CCCC(=O)NC2=O)C1
C16H16N4O4
328.328000
WLSTZEYYLZEFRH-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88610; PubChem:CID177778524
Local ready
Direct docking supported
E3L003952
BDB003952
US20250388593, Example 178
CC(=O)C1CCc2nc(N3CCC4(CCCC(=O)NC4=O)C3)ncc2C1
C19H24N4O3
356.426000
TVZALIOMMQIYHM-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88611; PubChem:CID178289688
Local ready
Direct docking supported
E3L003953
BDB003953
US20250388593, Example 179
N#Cc1ccc(N2CCC3(CCCC(=O)NC3=O)C2)cc1
C16H17N3O2
283.331000
PPHNMMGDLHXZJQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88612; PubChem:CID177778552
Local ready
Direct docking supported
E3L003954
BDB003954
US20250388593, Example 180
Cn1c(C(=O)OC(C)(C)C)cc2c(N3CCC4(CCCC(=O)NC4=O)C3)ncnc21
C21H27N5O4
413.478000
XUSSIZNHKCULNN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88613; PubChem:CID177778544
Local ready
Direct docking supported
E3L003955
BDB003955
US20250388593, Example 182
Nc1nccc(N2CCC3(CCCC(=O)NC3=O)C2)n1
C13H17N5O2
275.312000
ULCVXFLTXNCTDN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88614; PubChem:CID177778525
Local ready
Direct docking supported
E3L003956
BDB003956
US20250388593, Example 182
Nc1nccc(N2CCC3(CCCC(=O)NC3=O)C2)n1
C13H17N5O2
275.312000
ULCVXFLTXNCTDN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88615; PubChem:CID177778525
Local ready
Direct docking supported
E3L003957
BDB003957
US20250388593, Example 184
CC(C)(C)OC(=O)c1ccc(N2CCC3(CCCC(=O)NC3=O)C2)nn1
C18H24N4O4
360.414000
URRAFTYMNOSAON-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88616; PubChem:CID175638825
Local ready
Direct docking supported
E3L003958
BDB003958
US20250388593, Example 185
CC(C)(C)OC(=O)NCCCNc1nccc(N2CCC3(CCCC(=O)NC3=O)C2)n1
C21H32N6O4
432.525000
YCMJXHPLOBXXNW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88617; PubChem:CID178289689
Local ready
Direct docking supported
E3L003959
BDB003959
US20250388593, Example 186
CC(C)(C)OC(=O)NCCCCCCCCn1ccc2c(N3CCC4(CCCC(=O)NC4=O)C3)ccnc21
C29H43N5O4
525.694000
BROAFZPSAPJRDF-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88618; PubChem:CID178289690
Local ready
Direct docking supported
E3L003960
BDB003960
US20250388593, Example 187
COc1ccc2nc(N3CCC4(CCCC(=O)NC4=O)C3)sc2c1
C17H19N3O3S
345.424000
BMTRAUNHUFDJQA-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88619; PubChem:CID177778585
Local ready
Direct docking supported