E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L004101
BDB004101
US20250388593, Example 251
COc1ccc2nn(C3CCCC(=O)NC3=O)nc2c1
C13H14N4O3
274.280000
BOPCJGGHCFNZDD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95495; PubChem:CID177778503
Local ready
Direct docking supported
E3L004102
BDB004102
US20250388593, Example 252
O=C1CCCC(n2nc(Cl)ccc2=O)C(=O)N1
C10H10ClN3O3
255.661000
RKYVQDBBURUIST-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95496; PubChem:CID177778581
Local ready
Direct docking supported
E3L004103
BDB004103
US20250388593, Example 253
COc1ccc2c(c1)nnn2C1CCCC(=O)NC1=O
C13H14N4O3
274.280000
QWMQWTOZHUPYFG-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95497; PubChem:CID177778609
Local ready
Direct docking supported
E3L004104
BDB004104
US20250388593, Example 254
COc1ccc2nnn(C3CCCC(=O)NC3=O)c2c1
C13H14N4O3
274.280000
CPLQSRRRDBTXNP-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95498; PubChem:CID175638937
Local ready
Direct docking supported
E3L004105
BDB004105
US20250388593, Example 255
COc1cccc2c1nnn2C1CCCC(=O)NC1=O
C13H14N4O3
274.280000
ZTVLMPMJFYBEGP-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95499; PubChem:CID177778553
Local ready
Direct docking supported
E3L004106
BDB004106
US20250388593, Example 256
COc1cccc2nn(C3CCCC(=O)NC3=O)nc12
C13H14N4O3
274.280000
DDULZFDLEJMGBM-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95500; PubChem:CID175638840
Local ready
Direct docking supported
E3L004107
BDB004107
US20250388593, Example 257
O=C1CCCC(n2c(=O)ccc3cc(Br)ccc32)C(=O)N1
C15H13BrN2O3
349.184000
ISVFCMFQWPVAGC-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95501; PubChem:CID175638841
Local ready
Direct docking supported
E3L004108
BDB004108
US20250388593, Example 258
COc1cccc2c1ccc(=O)n2C1CCCC(=O)NC1=O
C16H16N2O4
300.314000
KPTRPGNUEPFWLJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95502; PubChem:CID175638842
Local ready
Direct docking supported
E3L004109
BDB004109
US20250388593, Example 259
Cn1c(=O)c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
C15H15N3O4
301.302000
LNCHQFMAEKDRMG-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95503; PubChem:CID175638843
Local ready
Direct docking supported
E3L004110
BDB004110
US20250388593, Example 260
CC(C)(C)OC(=O)CCc1ccc2c(c1)oc(=O)n2C1CCCC(=O)NC1=O
C20H24N2O6
388.420000
RMNWYELGEZFSGU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95504; PubChem:CID171844113
Local ready
Direct docking supported
E3L004111
BDB004111
US20250388593, Example 261
Cn1c(=O)n(C2CCCC(=O)NC2=O)c(=O)c2ccc(Br)cc21
C15H14BrN3O4
380.198000
HYZQEFYRTNOMKO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95505; PubChem:CID171844141
Local ready
Direct docking supported
E3L004112
BDB004112
US20250388593, Example 262
CC(C)(C)OC(=O)CCc1ccc2c(c1)sc(=O)n2C1CCCC(=O)NC1=O
C20H24N2O5S
404.488000
QJRHKWWEQRSGEL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95506; PubChem:CID175638938
Local ready
Direct docking supported
E3L004113
BDB004113
US20250388593, Example 263
CC(C)(C)OC(=O)CCc1cccc2c(=O)n(C3CCCC(=O)NC3=O)ccc12
C22H26N2O5
398.459000
MCKLUUOOWVOSIE-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95507; PubChem:CID175638939
Local ready
Direct docking supported
E3L004114
BDB004114
US20250388593, Example 265
Cn1c(=O)n(C2CCCC(=O)NC2=O)c(=O)c2ccc(CCC(=O)OC(C)(C)C)cc21
C22H27N3O6
429.473000
BZOBNTLDANKYAF-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95508; PubChem:CID175638941
Local ready
Direct docking supported
E3L004115
BDB004115
US20250388593, Example 266
Cn1c(-c2ccc(CCC(=O)OC(C)(C)C)cc2)nn(C2CCCC(=O)NC2=O)c1=O
C22H28N4O5
428.489000
NBRIHPPXKZTBQW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95509; PubChem:CID175638942
Local ready
Direct docking supported
E3L004116
BDB004116
US20250388593, Example 267
O=C1CCCC(Oc2ccc(Br)cc2)C(=O)N1
C12H12BrNO3
298.136000
CMBNXMXJMUVAJK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95510; PubChem:CID171843993
Local ready
Direct docking supported
E3L004117
BDB004117
BDBM95511
CC(C)(C)OC(=O)c1ccc(OC2CCCC(=O)NC2)nc1
C16H22N2O4
306.362000
FGRZLIWTDLTZKV-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95511; PubChem:CID171844118
Local ready
Direct docking supported
E3L004118
BDB004118
US20250388593, Example 269
O=C1CCCC2(CCN(C(=O)C3CCN(c4ncccn4)CC3)C2)C(=O)N1
C19H25N5O3
371.441000
LEWYZAZSRZANQO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95512; PubChem:CID171844031
Local ready
Direct docking supported
E3L004119
BDB004119
US20250388593, Example 271
CN(C1CCCC(=O)NC1=O)S(=O)(=O)c1ccc(CCCCCCNC(=O)OC(C)(C)C)cc1
C24H37N3O6S
495.642000
ZAZROKMHGVRKPP-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95513; PubChem:CID171843945
Local ready
Direct docking supported
E3L004120
BDB004120
US20250388593, Example 272
CN1CCN(c2cnn(C3CCCC(=O)NC3=O)c(=O)c2)CC1
C15H21N5O3
319.365000
PZKLKQUUJNQSKV-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95514; PubChem:CID171844147
Local ready
Direct docking supported