E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L004081
BDB004081
US20250388593, Example 229
CC(C)(C)OC(=O)CCCCCN1CC2(CC(=O)N(C3CCC(=O)NC3=O)C2=O)C1
C21H31N3O6
421.494000
DUCBXEHTNWZZPZ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95475; PubChem:CID175638925
Local ready
Direct docking supported
E3L004082
BDB004082
US20250388593, Example 230
Nc1nccc(N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)n1
C15H16N6O4
344.331000
MXNVZOFEGIQCHN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95476; PubChem:CID175638926
Local ready
Direct docking supported
E3L004083
BDB004083
US20250388593, Example 231
CC(C)(C)OC(=O)c1ccc2nc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)sc2c1
C23H24N4O6S
484.534000
NAQASMAOVZPDFN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95477; PubChem:CID175638927
Local ready
Direct docking supported
E3L004084
BDB004084
US20250388593, Example 232
O=C1CCC(N2C(=O)CC3(CN(c4ccc([N+](=O)[O-])cc4)C3)C2=O)C(=O)N1
C17H16N4O6
372.337000
QQLKWJNBHKJMCZ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95478; PubChem:CID177778567
Local ready
Direct docking supported
E3L004085
BDB004085
US20250388593, Example 233
CC(C)(C)OC(=O)NCCCNc1nccc(N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)n1
C23H31N7O6
501.544000
RUIOYQIVFYCFRJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95479; PubChem:CID178289697
Local ready
Direct docking supported
E3L004086
BDB004086
US20250388593, Example 234
CC(C)(C)OC(=O)COCCNc1nccc(N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)n1
C23H30N6O7
502.528000
KTDIYZDVHPRURD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95480; PubChem:CID178289698
Local ready
Direct docking supported
E3L004087
BDB004087
US20250388593, Example 235
Cn1ccc2c(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)ncnc21
C18H18N6O4
382.380000
BUKOBNSXQCUWHI-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95481; PubChem:CID175638930
Local ready
Direct docking supported
E3L004088
BDB004088
US20250388593, Example 236
CC(C)(C)OC(=O)NCCCCCCCCn1ccc2c(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)ncnc21
C30H41N7O6
595.701000
TZWSCMSQKORQGQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95482; PubChem:CID177778575
Local ready
Direct docking supported
E3L004089
BDB004089
US20250388593, Example 237
CC(C)(C)OC(=O)N1CCC(Oc2ccc(CN3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)cc2)CC1
C28H36N4O7
540.617000
ZZVUMBBQNNZODP-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95483; PubChem:CID175638831
Local ready
Direct docking supported
E3L004090
BDB004090
US20250388593, Example 238
COc1ccc2nc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)sc2c1
C19H18N4O5S
414.443000
NPDBLLBHCKUWAF-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95484; PubChem:CID175638832
Local ready
Direct docking supported
E3L004091
BDB004091
US20250388593, Example 239
COc1ccc2sc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)nc2c1
C19H18N4O5S
414.443000
QLHJILSADHLGTG-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95485; PubChem:CID177778589
Local ready
Direct docking supported
E3L004092
BDB004092
US20250388593, Example 240
COc1cccc2sc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)nc12
C19H18N4O5S
414.443000
PGZWFIGQYBWMLV-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95486; PubChem:CID175638834
Local ready
Direct docking supported
E3L004093
BDB004093
US20250388593, Example 241
CC(C)(C)OC(=O)NCCCCCOc1ccc2nc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)sc2c1
C28H35N5O7S
585.683000
HXMGLVGEFCVVQD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95487; PubChem:CID175638835
Local ready
Direct docking supported
E3L004094
BDB004094
US20250388593, Example 242
CC(C)(C)OC(=O)N1CCc2c(ncnc2N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)C1
C23H28N6O6
484.513000
SUYXZCICQNEHMU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95488; PubChem:CID177778482
Local ready
Direct docking supported
E3L004095
BDB004095
tert-Butyl 4-(3-fluoro-2,7-dioxoazepan-3-yl) benzoate
CC(C)(C)OC(=O)c1ccc(C2(F)CCCC(=O)NC2=O)cc1
C17H20FNO4
321.348000
WRHMYIYDNIUQNU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95489; PubChem:CID175638749
Local ready
Direct docking supported
E3L004096
BDB004096
N-[3-(3-Fluoro-2,7-dioxoazepan-3-yl) phenyl]acetamide
CC(=O)NC1=CC(C2(F)CCCC(=O)NC2=O)CC=C1
C14H17FN2O3
280.299000
OHLHUJXMCBWYTP-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95490; PubChem:CID178289699
Local ready
Direct docking supported
E3L004097
BDB004097
3-(6-Oxo-3-phenylpyridazin-1-yl) azepane-2,7-dione
O=C1CCCC(n2nc(-c3ccccc3)ccc2=O)C(=O)N1
C16H15N3O3
297.314000
NGWNRNXNZRBQCW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95491; PubChem:CID171844156
Local ready
Direct docking supported
E3L004098
BDB004098
US20250388593, Example 247
O=C1CCCC(n2ncc(-c3ccccc3)cc2=O)C(=O)N1
C16H15N3O3
297.314000
MBAZGAYGMKQCDL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95492; PubChem:CID177778555
Local ready
Direct docking supported
E3L004099
BDB004099
US20250388593, Example 248
O=C1CCCC(n2ncc(Cl)cc2=O)C(=O)N1
C10H10ClN3O3
255.661000
OKJFJUWPAJZTFB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95493; PubChem:CID177778608
Local ready
Direct docking supported
E3L004100
BDB004100
US20250388593, Example 250
O=C1CCCC(n2nnc3ccccc32)C(=O)N1
C12H12N4O2
244.254000
QCKJOQJKNQHMOW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM95494; PubChem:CID175638934
Local ready
Direct docking supported