E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L035321
BDB035321
US20240425497, Example 47
CC(c1cc2ncn(-c3cc(-c4ccc(F)cc4C(=O)N4CC(F)C4)cc(C4CC4)n3)c(=O)c2[nH]1)N1CCO[C@H](C)C1
C31H32F2N6O3
574.632000
GFQWTPUSRKXUJB-QNSVNVJESA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708719; PubChem:CID175664543
Local ready
Direct docking supported
E3L035322
BDB035322
US20240425497, Example 48
C[C@H]1CCCN(Cc2nc3c(C(F)(F)F)cn(-c4cc(-c5ccc(F)cc5C(=O)N5CC(F)C5)cc(C5CC5)n4)c(=O)c3[nH]2)C1
C32H31F5N6O2
626.630000
HSQXYFWCYWLVDS-KRWDZBQOSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708720; PubChem:CID175664544
Local ready
Direct docking supported
E3L035323
BDB035323
US20240425497, Example 49
Cc1cn(-c2cc(-c3ccc(F)cc3C(=O)N3CC(F)C3)cc(C3CC3)n2)c(=O)c2[nH]c([C@H]3CCCN3)nc12
C29H28F2N6O2
530.579000
PVWKZRGDOQPPOS-JOCHJYFZSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708721; PubChem:CID172580962
Local ready
Direct docking supported
E3L035324
BDB035324
US20240425497, Example 50
Cc1cn(-c2cc(-c3ccc(F)cc3C(=O)N3CC(F)C3)cc(C3CC3)n2)c(=O)c2[nH]c([C@@H]3CCCN3)nc12
C29H28F2N6O2
530.579000
PVWKZRGDOQPPOS-QFIPXVFZSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708722; PubChem:CID172581080
Local ready
Direct docking supported
E3L035325
BDB035325
US20240425497, Example 51
N#Cc1c[nH]c2c(=O)n(-c3cc(-c4ccc(F)cc4C(=O)N4CC(F)C4)cc(C4CC4)n3)cc(C(F)(F)F)c12
C27H18F5N5O2
539.464000
JTHWTFBCYZFQPL-UHFFFAOYSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708723; PubChem:CID172580984
Local ready
Direct docking supported
E3L035326
BDB035326
US20240425497, Example 52
O=C(c1cc(F)ccc1-c1cc(C2CC2)nc(-n2cc(C(F)(F)F)c3cc(CO)[nH]c3c2=O)c1)N1CC(F)C1
C27H21F5N4O3
544.480000
GOITYANHHOBHOE-UHFFFAOYSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708724; PubChem:CID172581018
Local ready
Direct docking supported
E3L035327
BDB035327
US20240425497, Example 53
N#Cc1c(CO)[nH]c2c(=O)n(-c3cc(-c4ccc(F)cc4C(=O)N4CC(F)C4)cc(C4CC4)n3)cc(C(F)(F)F)c12
C28H20F5N5O3
569.490000
KRXGJJKKQXXHMJ-UHFFFAOYSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708725; PubChem:CID172581030
Local ready
Direct docking supported
E3L035328
BDB035328
US20240425497, Example 54
N#Cc1cn(-c2cc(-c3ccc(F)cc3C(=O)N3CC(F)C3)cc(C3CC3)n2)c(=O)c2[nH]c(CO)cc12
C27H21F2N5O3
501.493000
XJBNSKOQXZGWDY-UHFFFAOYSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708726; PubChem:CID172580977
Local ready
Direct docking supported
E3L035329
BDB035329
US20240425497, Example 55
O=C(c1cc(F)ccc1-c1cc(C2CC2)nc(-n2cc(C(F)(F)F)c3cc(C4COCCN4)[nH]c3c2=O)c1)N1CC(F)C1
C30H26F5N5O3
599.560000
LIYYTBDDHCBHCI-UHFFFAOYSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708727; PubChem:CID172580954
Local ready
Direct docking supported
E3L035330
BDB035330
US20240425497, Example 56
CN1CCOCC1c1cc2c(C(F)(F)F)cn(-c3cc(-c4ccc(F)cc4C(=O)N4CC(F)C4)cc(C4CC4)n3)c(=O)c2[nH]1
C31H28F5N5O3
613.587000
FVHPKUUXOBUFMD-UHFFFAOYSA-N Q13191 E3 ubiquitin-protein ligase CBL-B
BindingDB, PubChem
BindingDB:BDBM708728; PubChem:CID172580994
Local ready
Direct docking supported
E3L035331
BDB035331
US20250000854, Example 1
Cn1ncc(-c2ccc3c(=O)[nH]cc(CN)c3c2)c1-c1c(F)cc2ccccc2c1C#N
C25H18FN5O
423.451000
NLAAREXOHJAMPT-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM710392; PubChem:CID172554892
Local ready
Direct docking supported
E3L035332
BDB035332
US20250000854, Example 2
Cn1ncc(-c2ccc3c(=O)[nH]cc(CN)c3c2)c1-c1cc(Cl)cc(OC2CC2)c1C#N
C24H20ClN5O2
445.910000
HXLLAPRVLAQZRW-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM710393; PubChem:CID172554896
Local ready
Direct docking supported
E3L035333
BDB035333
US20250000854, Example 3
Cn1ncc(-c2ccc3c(=O)[nH]cc(CN)c3c2)c1-c1c(F)c(Cl)cc(OC2CC2)c1C#N
C24H19ClFN5O2
463.900000
UTESOWDSXZVOAN-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM710394; PubChem:CID170710967
Local ready
Direct docking supported
E3L035334
BDB035334
US20250000854, Example 4
Cc1cc(-c2c(-c3ccc4c(=O)[nH]cc(CN)c4c3)cnn2C)c(C#N)c2ccccc12
C26H21N5O
419.488000
AKIXNJFKWKNNMK-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM710395; PubChem:CID172554887
Local ready
Direct docking supported
E3L035335
BDB035335
US20250000854, Example 5
Cn1ncc(-c2ccc3c(=O)[nH]cc(CN)c3c2)c1-c1cc(Cl)c2ccccc2c1C#N
C25H18ClN5O
439.906000
RJAGPKVDOMCORR-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM710396; PubChem:CID172554885
Local ready
Direct docking supported
E3L035336
BDB035336
US20250000854, Example 6
Cn1ncc(-c2ccc3c(=O)[nH]cc(CN)c3c2)c1-c1cccc(OC2CC2)c1C#N
C24H21N5O2
411.465000
FNXQEEDEVVIGAP-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM710397; PubChem:CID172554883
Local ready
Direct docking supported
E3L035337
BDB035337
US20250000854, Example 7
Cn1ncc(-c2ccc3c(=O)[nH]cc(CN)c3c2)c1-c1cc(C(F)(F)F)cc(OC2CC2)c1C#N
C25H20F3N5O2
479.462000
AITZTZPDHDIFFE-UHFFFAOYSA-N Q9BQA1 Protein arginine N-methyltransferase 5
BindingDB, PubChem
BindingDB:BDBM710398; PubChem:CID172554891
Local ready
Direct docking supported
E3L035338
BDB035338
US20250002493, Embodiment 18
CN[C@@H](C)C(=O)N[C@H](C(=O)N1CCc2cc(=O)n(Cc3ccc(F)cc3F)cc21)C1CCCCC1
C26H32F2N4O3
486.563000
MJLJDBKOWQTSOM-FYSMJZIKSA-N P98170, Q13489, Q13490 Baculoviral IAP repeat-containing protein 3, Baculoviral IAP repeat-containing protein 2, E3 ubiquitin-protein ligase XIAP
BindingDB, PubChem
BindingDB:BDBM710512; PubChem:CID175664846
Local ready
Direct docking supported
E3L035339
BDB035339
US20250002493, Embodiment 25
CN[C@@H](C)C(=O)N[C@H](C(=O)N1CCc2cc(=O)n(Cc3ccc(F)cc3)cc21)C(C)(C)C
C24H31FN4O3
442.535000
GLFJXJPGQTYRCL-YCRPNKLZSA-N P98170, Q13489, Q13490 E3 ubiquitin-protein ligase XIAP, Baculoviral IAP repeat-containing protein 2, Baculoviral IAP repeat-containing protein 3
BindingDB, PubChem
BindingDB:BDBM710513; PubChem:CID175664847
Local ready
Direct docking supported
E3L035340
BDB035340
US20250002493, Embodiment 29
[2H]C([2H])([2H])N[C@@H](C)C(=O)N[C@H](C(=O)N1CCc2cc(=O)n(Cc3ccc(F)cc3)cc21)C1CCCCC1
C26H33FN4O3
471.591305
RCNUEUPZWQGQLB-FFCWOPMGSA-N P98170, Q13489, Q13490 E3 ubiquitin-protein ligase XIAP, Baculoviral IAP repeat-containing protein 3, Baculoviral IAP repeat-containing protein 2
BindingDB, PubChem
BindingDB:BDBM710514; PubChem:CID175664848
Local ready
Direct docking supported