E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003881
BDB003881
US20250388593, Example 86
Nc1ccc(N2CCC3(CCCC(=O)NC3=O)C2)c(F)c1
C15H18FN3O2
291.326000
QPTLKDOBCXQMNM-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88486; PubChem:CID177778598
Local ready
Direct docking supported
E3L003882
BDB003882
US20250388593, Example 87
CC(=O)Nc1ccc2nc(N3CCC4(CCCC(=O)NC4=O)C3)sc2c1
C18H20N4O3S
372.450000
FYMHPZVYCAPJHD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88489; PubChem:CID177778558
Local ready
Direct docking supported
E3L003883
BDB003883
US20250388593, Example 88
CC(=O)Nc1ccc(N2CCC3(CCCC(=O)NC3=O)C2)c(F)c1
C17H20FN3O3
333.363000
RJYJCZHUNRSWQK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88490; PubChem:CID177778584
Local ready
Direct docking supported
E3L003884
BDB003884
US20250388593, Example 89
CC(=O)N1CCN(Cc2ccc(N3CCC4(CCCC(=O)NC4=O)C3)nc2)CC1
C21H29N5O3
399.495000
ITIQDOJGKCJAII-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88493; PubChem:CID171844006
Local ready
Direct docking supported
E3L003885
BDB003885
US20250388593, Example 90-1
CC(C)(C)OC(=O)c1ccc(N2CCC3(CCCC(=O)NC3=O)C2)nc1
C19H25N3O4
359.426000
RJKWCFDTMAGAGJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88494; PubChem:CID171843937
Local ready
Direct docking supported
E3L003886
BDB003886
US20250388593, Example 90-2
CC(C)(C)OC(=O)c1ccc(N2CCC3(CCCC(=O)NC3=O)C2=O)nc1
C19H23N3O5
373.409000
UHCXIOLRBMVBSJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88495; PubChem:CID171844145
Local ready
Direct docking supported
E3L003887
BDB003887
US20250388593, Example 91
CC(C)(C)OC(=O)c1ccnc(N2CCC3(CCCC(=O)NC3=O)C2)c1
C19H25N3O4
359.426000
CKHMICNOAOPMDO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88496; PubChem:CID171844146
Local ready
Direct docking supported
E3L003888
BDB003888
US20250388593, Example 92
CC(C)(C)OC(=O)c1cccc(N2CCC3(CCCC(=O)NC3=O)C2)n1
C19H25N3O4
359.426000
HXUVHGIEQXTHIA-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88497; PubChem:CID171844079
Local ready
Direct docking supported
E3L003889
BDB003889
US20250388593, Example 93
CC(C)(C)OC(=O)c1ccc(N2CCCC3(CCCC(=O)NC3=O)C2)nc1
C20H27N3O4
373.453000
ONWARMZJYDVOFB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88499; PubChem:CID171843952
Local ready
Direct docking supported
E3L003890
BDB003890
US20250388593, Example 94
CC(C)(C)OC(=O)c1ccc(N2CCC3(CCCC(=O)NC3=O)CC2)nc1
C20H27N3O4
373.453000
GZANGONEPGSRCG-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88504; PubChem:CID171843933
Local ready
Direct docking supported
E3L003891
BDB003891
US20250388593, Example 95
CC(C)(C)OC(=O)c1cnc(N2CCC3(CCCC(=O)NC3=O)C2)s1
C17H23N3O4S
365.455000
KCYSOSNBOOSDCQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88505; PubChem:CID171843953
Local ready
Direct docking supported
E3L003892
BDB003892
US20250388593, Example 96
CNC(=O)c1ccc(N2CCC3(CCCC(=O)NC3=O)C2)nc1
C16H20N4O3
316.361000
ZBLMYXWGILWIIX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88506; PubChem:CID171843966
Local ready
Direct docking supported
E3L003893
BDB003893
US20250388593, Example 97
CC(C)(C)OC(=O)N1CCN(C(=O)c2ccc(N3CCC4(CCCC(=O)NC4=O)C3)nc2)CC1
C24H33N5O5
471.558000
RSKYYMBEWKGYNQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88507; PubChem:CID171844162
Local ready
Direct docking supported
E3L003894
BDB003894
US20250388593, Example 98
CC(C)(C)OC(=O)N1CCN(C(=O)CN2CCC3(CCCC(=O)NC3=O)CC2=O)CC1
C21H32N4O6
436.509000
HDLHOBPPOQTVSJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88508; PubChem:CID171844044
Local ready
Direct docking supported
E3L003895
BDB003895
US20250388593, Example 99
CC(C)(C)OC(=O)N1CCN(Cc2ccc(N3CCC4(CCCC(=O)NC4=O)C3)nc2)CC1
C24H35N5O4
457.575000
NBJZYOQDHPXRLX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88509; PubChem:CID171844037
Local ready
Direct docking supported
E3L003896
BDB003896
2-Benzoyl-2,8-diazaspiro [5.6]dodecane-7,9-dione
O=C1CCCC2(CCCN(C(=O)c3ccccc3)C2)C(=O)N1
C17H20N2O3
300.358000
UUWCUFXINSQNDG-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88510; PubChem:CID171844064
Local ready
Direct docking supported
E3L003897
BDB003897
3-Benzoyl-3,8-diazaspiro [5.6]dodecane-7,9-dione
O=C1CCCC2(CCN(C(=O)c3ccccc3)CC2)C(=O)N1
C17H20N2O3
300.358000
DTOPKLYQQDJIHD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88511; PubChem:CID171844068
Local ready
Direct docking supported
E3L003898
BDB003898
US20250388593, Example 107
CC(C)(C)OC(=O)CN1CCC2(CCCC(=O)NC2=O)CC1=O
C16H24N2O5
324.377000
BUEKFKCILYOXKL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88512; PubChem:CID171844100
Local ready
Direct docking supported
E3L003899
BDB003899
US20250388593, Example 108
CC(C)(C)OC(=O)c1ccc(N2CCC3(CCCC(=O)NC3=O)CC2=O)nc1
C20H25N3O5
387.436000
PWSUHPWXNIIJIQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88513; PubChem:CID171843978
Local ready
Direct docking supported
E3L003900
BDB003900
US20250388593, Example 109
CC(C)(C)OC(=O)c1ccc(N2CCC3(CCCC(=O)NC3=O)CC2=O)cc1
C21H26N2O5
386.448000
ONWGEIMUOXTXBN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88514; PubChem:CID171844023
Local ready
Direct docking supported