E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003841
BDB003841
US20250388593, Example 45
CC(C)(C)OC(=O)c1ccc(N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)nc1
C21H24N4O6
428.445000
FRTFKWJYECPXBY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88440; PubChem:CID171843960
Local ready
Direct docking supported
E3L003842
BDB003842
US20250388593, Example 46
CC(C)(C)OC(=O)c1ccnc(N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)c1
C21H24N4O6
428.445000
SULFHTOAGBDWIL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88441; PubChem:CID177778580
Local ready
Direct docking supported
E3L003843
BDB003843
US20250388593, Example 47
CC(C)(C)OC(=O)c1cccc(N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)n1
C21H24N4O6
428.445000
HZTYMIVXMUBJET-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88442; PubChem:CID177778538
Local ready
Direct docking supported
E3L003844
BDB003844
US20250388593, Example 48
CC(C)(C)OC(=O)CN1CC2(CC(=O)N(C3CCC(=O)NC3=O)C2=O)C1
C17H23N3O6
365.386000
ZDRPNMFIRFZUQY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88443; PubChem:CID177778603
Local ready
Direct docking supported
E3L003845
BDB003845
US20250388593, Example 49
CC(C)(C)OC(=O)C(C)(C)N1CC2(CC(=O)N(C3CCC(=O)NC3=O)C2=O)C1
C19H27N3O6
393.440000
PFSXIMHJHKHFFU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88444; PubChem:CID177778502
Local ready
Direct docking supported
E3L003846
BDB003846
US20250388593, Example 50
CC(C)(C)OC(=O)NCCCCCN1CC2(CC(=O)N(C3CCC(=O)NC3=O)C2=O)C1
C21H32N4O6
436.509000
RDEAWYQJHDBFLW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88445; PubChem:CID177778549
Local ready
Direct docking supported
E3L003847
BDB003847
US20250388593, Example 51
CC(C)(C)OC(=O)NCCCCCCCCN1CC2(CC(=O)N(C3CCC(=O)NC3=O)C2=O)C1
C24H38N4O6
478.590000
PZHCAYMCMMCGHJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88446; PubChem:CID177778559
Local ready
Direct docking supported
E3L003848
BDB003848
US20250388593, Example 52
CCOC(=O)c1ccc2nc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)sc2c1
C21H20N4O6S
456.480000
KZZMPTKFLPFXHY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88447; PubChem:CID177778483
Local ready
Direct docking supported
E3L003849
BDB003849
US20250388593, Example 53
COC(=O)c1cccc(CN2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)c1
C20H21N3O6
399.403000
FLMFIHUDVLUOAR-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88448; PubChem:CID177778526
Local ready
Direct docking supported
E3L003850
BDB003850
US20250388593, Example 54
COC(=O)c1ccc(CN2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)cc1
C20H21N3O6
399.403000
JKKSSIXFCXQERZ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88449; PubChem:CID177778560
Local ready
Direct docking supported
E3L003851
BDB003851
US20250388593, Example 55
O=C1CCC(N2C(=O)CC3(CN(C(=O)CNC(=O)c4ccccc4)C3)C2=O)C(=O)N1
C20H20N4O6
412.402000
VWYDPAXUGXKNIS-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88450; PubChem:CID171843951
Local ready
Direct docking supported
E3L003852
BDB003852
US20250388593, Example 56
CC(C)(C)OC(=O)c1ccc(N2CCCC3(CCCC(=O)NC3=O)CCC2)nc1
C22H31N3O4
401.507000
ORFOUNMQGLWBNX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88452; PubChem:CID171844130
Local ready
Direct docking supported
E3L003853
BDB003853
N-[(2,7-Dioxoazepan-3-yl) methyl]benzamide
O=C1CCCC(CNC(=O)c2ccccc2)C(=O)N1
C14H16N2O3
260.293000
LBIOXQODMKOGTQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88454; PubChem:CID171844152
Local ready
Direct docking supported
E3L003854
BDB003854
US20250388593, Example 52
CCOC(=O)c1ccc2nc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)sc2c1
C21H20N4O6S
456.480000
KZZMPTKFLPFXHY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88455; PubChem:CID177778483
Local ready
Direct docking supported
E3L003855
BDB003855
tert-Butyl 3-(2,7-dioxoazepan-3-yl) benzoate
CC(C)(C)OC(=O)C1=CC(C2CCCC(=O)NC2=O)CC=C1
C17H23NO4
305.374000
ZVOVMWPGRSVFIB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88456; PubChem:CID178289681
Local ready
Direct docking supported
E3L003856
BDB003856
3-(4-Nitrophenyl) azepane-2,7-dione
O=C1CCCC(c2ccc([N+](=O)[O-])cc2)C(=O)N1
C12H12N2O4
248.238000
OYPIIJSKUMGOSW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88458; PubChem:CID171844033
Local ready
Direct docking supported
E3L003857
BDB003857
3-(3-Nitrophenyl) azepane-2,7-dione
O=C1CCCC(C2=CC([N+](=O)[O-])CC=C2)C(=O)N1
C12H14N2O4
250.254000
WXFRTFBUYNSEOJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88459; PubChem:CID178289682
Local ready
Direct docking supported
E3L003858
BDB003858
3-(2-Chloro-5-nitrophenyl) azepane-2,7-dione
O=C1CCCC(c2cc([N+](=O)[O-])ccc2Cl)C(=O)N1
C12H11ClN2O4
282.683000
VQCWCQSMLCAWEN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88460; PubChem:CID171844007
Local ready
Direct docking supported
E3L003859
BDB003859
US20250388593, Example 65
CC(=O)Nc1ccc(Cl)c(C2CCCC(=O)NC2=O)c1
C14H15ClN2O3
294.738000
CJQLSRZMIZUVBX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88461; PubChem:CID171844170
Local ready
Direct docking supported
E3L003860
BDB003860
BDBM88462
COC(=O)C(CCCCNC(=O)OCc1ccccc1)Oc1ccccc1[N+](=O)[O-]
C21H24N2O7
416.430000
DCHRNNVLHYSWCR-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88462; PubChem:CID177307317
Local ready
Direct docking supported