E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003901
BDB003901
US20250388593, Example 110
CC(C)(C)OC(=O)c1cccc(N2CCC3(CCCC(=O)NC3=O)CC2=O)c1
C21H26N2O5
386.448000
ZKQRQORYHGVSDV-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88515; PubChem:CID171843990
Local ready
Direct docking supported
E3L003902
BDB003902
US20250388593, Example 111
CC(C)(C)OC(=O)c1ccc(CN2CCC3(CCCC(=O)NC3=O)CC2=O)cc1
C22H28N2O5
400.475000
FHFIIWCMXBVFAS-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88516; PubChem:CID171843878
Local ready
Direct docking supported
E3L003903
BDB003903
US20250388593, Example 113
CC(C)(C)OC(=O)c1ccc(N2CC3(CCCC(=O)NC3=O)CC2=O)nc1
C19H23N3O5
373.409000
ATLKYGQAURUMEJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88518; PubChem:CID171843999
Local ready
Direct docking supported
E3L003904
BDB003904
US20250388593, Example 115
CC(C)(C)OC(=O)c1cnc(N2CCCC(=O)NC2=O)s1
C13H17N3O4S
311.363000
OSGXCWPHMSTUKD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88519; PubChem:CID171844137
Local ready
Direct docking supported
E3L003905
BDB003905
US20250388593, Example 116
O=C1CCCN(c2nc3ccc([N+](=O)[O-])cc3s2)C(=O)N1
C12H10N4O4S
306.303000
ZKAOLONZNKSZGF-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88520; PubChem:CID171843982
Local ready
Direct docking supported
E3L003906
BDB003906
1-Quinolin-6-yl-1,3-diazepane-2,4-dione
O=C1CCCN(c2ccc3ncccc3c2)C(=O)N1
C14H13N3O2
255.277000
UFIIVBZJRGIEAR-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88521; PubChem:CID171843891
Local ready
Direct docking supported
E3L003907
BDB003907
US20250388593, Example 118
Nc1ccc2nc(N3CCCC(=O)NC3=O)sc2c1
C12H12N4O2S
276.321000
OMNOIWMWSSZLRQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88522; PubChem:CID171844025
Local ready
Direct docking supported
E3L003908
BDB003908
US20250388593, Example 119
CC(=O)Nc1ccc2nc(N3CCCC(=O)NC3=O)sc2c1
C14H14N4O3S
318.358000
GFTUBOIUECZKEX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88523; PubChem:CID171844093
Local ready
Direct docking supported
E3L003909
BDB003909
3-(N-Methyl-4-nitro-anilino) azepane-2,7-dione
CN(c1ccc([N+](=O)[O-])cc1)C1CCCC(=O)NC1=O
C13H15N3O4
277.280000
DRFZXRDFBIDDIE-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88524; PubChem:CID171844135
Local ready
Direct docking supported
E3L003910
BDB003910
BDBM88525
CC(=O)Nc1ccc(N(C)C2CCCC(=O)NC2=O)cc1
C15H19N3O3
289.335000
NWNMXBADNFWWLU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88525; PubChem:CID171844038
Local ready
Direct docking supported
E3L003911
BDB003911
2-Benzoyl-2,7-diazaspiro [4.6]undecane-6,8-dione
O=C1CCCC2(CCN(C(=O)c3ccccc3)C2)C(=O)N1
C16H18N2O3
286.331000
XJAMQNSDYUTYJY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88545; PubChem:CID171843874
Local ready
Direct docking supported
E3L003912
BDB003912
US20250388593, Example 123
CC(C)(C)OC(=O)c1cccc(N2CCC3(CCCC(=O)NC3=O)C2)c1
C20H26N2O4
358.438000
ZAPJXIUEUHWKDB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88569; PubChem:CID171844157
Local ready
Direct docking supported
E3L003913
BDB003913
US20250388593, Example 125
COc1ccnc(N2CCC3(CCCC(=O)NC3=O)C2)c1
C15H19N3O3
289.335000
OEHYSXUIJHBOST-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88570; PubChem:CID171844075
Local ready
Direct docking supported
E3L003914
BDB003914
US20250388593, Example 126
CC(C)(C)OC(=O)N1CCN(c2ccnc(N3CCC4(CCCC(=O)NC4=O)C3)c2)CC1
C23H33N5O4
443.548000
SPAUOQXARUEDMA-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88571; PubChem:CID171843862
Local ready
Direct docking supported
E3L003915
BDB003915
US20250388593, Example 127
O=C1CCCC2(CCN(c3ncc(Br)cn3)C2)C(=O)N1
C13H15BrN4O2
339.193000
CJULAIBQPLADGJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88572; PubChem:CID171843867
Local ready
Direct docking supported
E3L003916
BDB003916
US20250388593, Example 128
CC(C)(C)OC(=O)c1ccc(N2CCC3(CCCC(=O)NC3=O)C2)cc1
C20H26N2O4
358.438000
XLQLTRUFUJVMQN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88573; PubChem:CID171844105
Local ready
Direct docking supported
E3L003917
BDB003917
US20250388593, Example 131
CC(C)(C)OC(=O)c1ccc(N2CCC3(CC=CC(=O)NC3=O)C2)nc1
C19H23N3O4
357.410000
DJAODXYPGMGEAU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88574; PubChem:CID171843983
Local ready
Direct docking supported
E3L003918
BDB003918
3-(3-Aminophenyl)-3-methyl-azepane-2,7-dione
CC1(c2cccc(N)c2)CCCC(=O)NC1=O
C13H16N2O2
232.283000
PLKIFJVJHYIDCX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88575; PubChem:CID171844034
Local ready
Direct docking supported
E3L003919
BDB003919
N-[3-(3-Methyl-2,7-dioxoazepan-3-yl)phenyl]acetamide
CC(=O)Nc1cccc(C2(C)CCCC(=O)NC2=O)c1
C15H18N2O3
274.320000
ZPLHUSAWYFZJKY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88576; PubChem:CID171844083
Local ready
Direct docking supported
E3L003920
BDB003920
3-(3-Iodoindazol-1-yl)azepane-2,7-dione
O=C1CCCC(n2nc(I)c3ccccc32)C(=O)N1
C13H12IN3O2
369.162000
DUHVXLTVVMXRQJ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88577; PubChem:CID171844076
Local ready
Direct docking supported