E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003861
BDB003861
BDBM88463
O=C(NCCCCC(Oc1ccccc1[N+](=O)[O-])C(=O)O)OCc1ccccc1
C20H22N2O7
402.403000
ZHSPSRDKHJGATK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88463; PubChem:CID171843864
Local ready
Direct docking supported
E3L003862
BDB003862
US20250388593, Example 67
CC(C)(C)OC(=O)COc1cccc(C(=O)NC2CCCC(=O)NC2=O)c1F
C19H23FN2O6
394.399000
QFZGPABYHSLHGB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88464; PubChem:CID171843869
Local ready
Direct docking supported
E3L003863
BDB003863
US20250388593, Example 68
COc1c(OCC(=O)OC(C)(C)C)cccc1C(=O)NC1CCCC(=O)NC1=O
C20H26N2O7
406.435000
GOYBFZHAXQQDGF-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88465; PubChem:CID176081791
Local ready
Direct docking supported
E3L003864
BDB003864
US20250388593, Example 69
CC(C)(C)OC(=O)COc1cccc(C(=O)NC2CCCC(=O)NC2=O)n1
C18H23N3O6
377.397000
VMCMHALPTLYJBD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88466; PubChem:CID176081789
Local ready
Direct docking supported
E3L003865
BDB003865
US20250388593, Example 70
Nc1cccc(C2CCCC(=O)NC2=O)c1
C12H14N2O2
218.256000
JNAWEDPNYXKVCN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88467; PubChem:CID171843901
Local ready
Direct docking supported
E3L003866
BDB003866
US20250388593, Example 71
CC(=O)Nc1cccc(C2CCCC(=O)NC2=O)c1
C14H16N2O3
260.293000
LFYAKMDZGCKPGC-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88468; PubChem:CID171843949
Local ready
Direct docking supported
E3L003867
BDB003867
US20250388593, Example 72
O=C1CCCC2(CCN(c3nc4ccc([N+](=O)[O-])cc4s3)C2)C(=O)N1
C16H16N4O4S
360.395000
IKUMBYXJMQLYNB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88469; PubChem:CID171843911
Local ready
Direct docking supported
E3L003868
BDB003868
US20250388593, Example 73
CCOC(=O)c1ccc2nc(N3CCC4(CCCC(=O)NC4=O)C3)sc2c1
C19H21N3O4S
387.461000
ITTBTLNRQXLGBQ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88471; PubChem:CID177778587
Local ready
Direct docking supported
E3L003869
BDB003869
US20250388593, Example 74
O=C1CCCC2(CCN(c3nc4ncccc4s3)C2)C(=O)N1
C15H16N4O2S
316.386000
NYPHERRKGLGHJX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88472; PubChem:CID177778554
Local ready
Direct docking supported
E3L003870
BDB003870
US20250388593, Example 75
O=C1CCCC2(CCN(c3ccc([N+](=O)[O-])cn3)C2)C(=O)N1
C14H16N4O4
304.306000
PGHVTMGBYOJHLY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88473; PubChem:CID177778565
Local ready
Direct docking supported
E3L003871
BDB003871
US20250388593, Example 76
O=Cc1ccc(N2CCC3(CCCC(=O)NC3=O)C2)nc1
C15H17N3O3
287.319000
BNFWNJNHNCEZRO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88474; PubChem:CID171843872
Local ready
Direct docking supported
E3L003872
BDB003872
US20250388593, Example 77
O=C1CCCC2(CCN(c3ncc([N+](=O)[O-])cc3Cl)C2)C(=O)N1
C14H15ClN4O4
338.751000
ZVWOXCRRBRTJQD-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88475; PubChem:CID177778610
Local ready
Direct docking supported
E3L003873
BDB003873
US20250388593, Example 78
Cc1cc([N+](=O)[O-])cnc1N1CCC2(CCCC(=O)NC2=O)C1
C15H18N4O4
318.333000
PQVJGYVOTPWSJL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88476; PubChem:CID177778557
Local ready
Direct docking supported
E3L003874
BDB003874
US20250388593, Example 79
O=C1CCCC2(CCN(c3ncc([N+](=O)[O-])cc3C(F)(F)F)C2)C(=O)N1
C15H15F3N4O4
372.303000
DHSFIKMIFCBMLC-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88477; PubChem:CID177778522
Local ready
Direct docking supported
E3L003875
BDB003875
US20250388593, Example 80
O=C1CCCC2(CCN(c3ccc([N+](=O)[O-])cc3)C2)C(=O)N1
C15H17N3O4
303.318000
QRFUFZQLIHJCTK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88479; PubChem:CID177778547
Local ready
Direct docking supported
E3L003876
BDB003876
US20250388593, Example 81
Cc1cc(N2CCC3(CCCC(=O)NC3=O)C2)ccc1[N+](=O)[O-]
C16H19N3O4
317.345000
NPDWLIIFQQTYKO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88480; PubChem:CID177778616
Local ready
Direct docking supported
E3L003877
BDB003877
US20250388593, Example 82
Cc1cc([N+](=O)[O-])ccc1N1CCC2(CCCC(=O)NC2=O)C1
C16H19N3O4
317.345000
QQTJQNWLIHLKEF-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88481; PubChem:CID177778490
Local ready
Direct docking supported
E3L003878
BDB003878
US20250388593, Example 83
O=C1CCCC2(CCN(c3ccc([N+](=O)[O-])cc3F)C2)C(=O)N1
C15H16FN3O4
321.308000
VFFVSZIGWDYRDB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88482; PubChem:CID177778601
Local ready
Direct docking supported
E3L003879
BDB003879
US20250388593, Example 84
O=C1CCCC2(CCN(c3ccc([N+](=O)[O-])cc3Cl)C2)C(=O)N1
C15H16ClN3O4
337.763000
JKBZYWHSHNBKPF-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88484; PubChem:CID177778521
Local ready
Direct docking supported
E3L003880
BDB003880
US20250388593, Example 85
Nc1ccc2nc(N3CCC4(CCCC(=O)NC4=O)C3)sc2c1
C16H18N4O2S
330.413000
BBMHHVVJWVRCNL-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88485; PubChem:CID171843947
Local ready
Direct docking supported