E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L003821
BDB003821
BDBM88420
COC(=O)c1ccc(=O)n(C2CCCC(=O)NC2=O)c1
C13H14N2O5
278.264000
GSOVSYLAMXWEGC-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88420; PubChem:CID171844119
Local ready
Direct docking supported
E3L003822
BDB003822
US20250388593, Example 27
CN(C1CCCC(=O)NC1=O)S(=O)(=O)c1ccc(CNC(=O)OC(C)(C)C)cc1
C19H27N3O6S
425.507000
HAYAKFYYLSIEQZ-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88421; PubChem:CID171843880
Local ready
Direct docking supported
E3L003823
BDB003823
N-(4-Fluorophenyl)-2,7-dioxoazepane-3-carboxamide
O=C1CCCC(C(=O)Nc2ccc(F)cc2)C(=O)N1
C13H13FN2O3
264.256000
RBUNOWIRWQSQPG-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88422; PubChem:CID171844117
Local ready
Direct docking supported
E3L003824
BDB003824
BDBM88423
CC(C)(C)OC(=O)N1CCN(C2CCCC(=O)NC2=O)C(=O)C1
C15H23N3O5
325.365000
ZABLNDADWWWQNM-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88423; PubChem:CID171844165
Local ready
Direct docking supported
E3L003825
BDB003825
US20250388593, Example 29-2
CC(C)(C)OC(=O)N1CCN(C2CCCC(=O)NC2=O)C(=O)C1=O
C15H21N3O6
339.348000
CCJAJCYAJOCWBI-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88424; PubChem:CID171844148
Local ready
Direct docking supported
E3L003826
BDB003826
US20250388593, Example 30
CC(C)(C)OC(=O)c1ccc(N2CCN(C3CCCC(=O)NC3=O)C(=O)C2)nc1
C20H26N4O5
402.451000
HBWUNVQSBLANPU-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88425; PubChem:CID171844112
Local ready
Direct docking supported
E3L003827
BDB003827
BDBM88426
CC1(CN2C(=O)c3ccccc3C2=O)CCCC(=O)NC1=O
C16H16N2O4
300.314000
PDFYDUPFAZOCQO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88426; PubChem:CID171844127
Local ready
Direct docking supported
E3L003828
BDB003828
US20250388593, Example 32
CC(C)(C)OC(=O)c1cnc(N2CCC3(CCCC(=O)NC3=O)C2)nc1
C18H24N4O4
360.414000
DNXVQYIGMXPSQK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88427; PubChem:CID171843894
Local ready
Direct docking supported
E3L003829
BDB003829
US20250388593, Example 33
COC(=O)c1cccc(CN2CCC3(CCCC(=O)NC3=O)C2)c1
C18H22N2O4
330.384000
DYFQLLSIBBPDIP-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88428; PubChem:CID177778550
Local ready
Direct docking supported
E3L003830
BDB003830
US20250388593, Example 34
COC(=O)c1ccc(CN2CCC3(CCCC(=O)NC3=O)C2)cc1
C18H22N2O4
330.384000
MNWPSJMUHQKEHY-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88429; PubChem:CID177778599
Local ready
Direct docking supported
E3L003831
BDB003831
US20250388593, Example 35
CC(C)(C)OC(=O)c1cnc(N2CCC3(CCCC(=O)NC3=O)C2)cn1
C18H24N4O4
360.414000
DXYUTFOYFKJUIC-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88430; PubChem:CID177778510
Local ready
Direct docking supported
E3L003832
BDB003832
US20250388593, Example 36
COC(=O)c1cc2c(N3CCC4(CCCC(=O)NC4=O)C3)ncnc2n1C
C18H21N5O4
371.397000
NMPJJRMGUQDRAK-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88431; PubChem:CID177778611
Local ready
Direct docking supported
E3L003833
BDB003833
US20250388593, Example 37
Cn1ccc2c(N3CCC4(CCCC(=O)NC4=O)C3)ncnc21
C16H19N5O2
313.361000
MOWVDODWZGOFJH-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88432; PubChem:CID177778504
Local ready
Direct docking supported
E3L003834
BDB003834
US20250388593, Example 38
O=C1CCCC2(CCN(c3ccc(C(F)(F)F)cn3)C2)C(=O)N1
C15H16F3N3O2
327.306000
YPRSNYPXPJFGFN-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88433; PubChem:CID177778542
Local ready
Direct docking supported
E3L003835
BDB003835
US20250388593, Example 39
Cn1ncc2c(N3CCC4(CCCC(=O)NC4=O)C3)ncnc21
C15H18N6O2
314.349000
QAILTKHLCMSDPO-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88434; PubChem:CID177778604
Local ready
Direct docking supported
E3L003836
BDB003836
US20250388593, Example 40
CCOC(=O)c1cc(N2CCC3(CCCC(=O)NC3=O)C2)ncc1C(F)(F)F
C18H20F3N3O4
399.369000
YIRVZODSOGADHX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88435; PubChem:CID177778594
Local ready
Direct docking supported
E3L003837
BDB003837
US20250388593, Example 41
COc1cc(N2CCC3(CCCC(=O)NC3=O)C2)ccc1[N+](=O)[O-]
C16H19N3O5
333.344000
ZMJDVZCYILVPEX-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88436; PubChem:CID177778497
Local ready
Direct docking supported
E3L003838
BDB003838
US20250388593, Example 42
COc1cc([N+](=O)[O-])ccc1N1CCC2(CCCC(=O)NC2=O)C1
C16H19N3O5
333.344000
ZNVIZRYGDWLCOB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88437; PubChem:CID177778539
Local ready
Direct docking supported
E3L003839
BDB003839
US20250388593, Example 43
COC(=O)c1cc2ncnc(N3CCC4(CCCC(=O)NC4=O)C3)c2s1
C17H18N4O4S
374.422000
KUJTZKMAFZBHOW-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88438; PubChem:CID177778507
Local ready
Direct docking supported
E3L003840
BDB003840
US20250388593, Example 44-2
CC(C)(C)OC(=O)N1CC2(CC(=O)N(C3CCC(=O)NC3=O)C2=O)C1
C16H21N3O6
351.359000
OXOURRNLCMQWQB-UHFFFAOYSA-N Q96SW2 Protein cereblon
BindingDB, PubChem
BindingDB:BDBM88439; PubChem:CID171843897
Local ready
Direct docking supported