E3 Ligase Ligand Database

MGD and E3 ligand related compounds for browsing and docking.
67228 compounds match the current filters. 123739 source records are linked to them.
Compound ID Name Formula / MW InChIKey E3 Target Source Docking structure
E3L041061
BDB041061
BDBM771574
CCC(C)c1c2c(cn1-c1cnc(OC)nc1OC)C(=O)N(c1cc(Cl)ccc1F)[C@]21C(=O)Nc2cc(Cl)ccc21
C29H24Cl2FN5O4
596.446000
VCYMIRMEWQHYHV-LKFCVPRCSA-N Q00987 E3 ubiquitin-protein ligase Mdm2
BindingDB
BindingDB:BDBM771574
Local ready
Direct docking supported
E3L041062
BDB041062
US20250289799, Example 1
COc1cnc(-c2ccccc2C(C)C)nc1N(C)Cc1ccc(-c2ccccn2)cc1
C27H28N4O
424.548000
NYQSADXSTZPZOK-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771860; PubChem:CID175444705
Local ready
Direct docking supported
E3L041063
BDB041063
US20250289799, Example 2
COc1cnc(-c2ccccc2C(C)C)nc1N(C)CC1CCN(c2ccccn2)CC1
C26H33N5O
431.584000
XVXCIBOJDBJSRF-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771861; PubChem:CID176244119
Local ready
Direct docking supported
E3L041064
BDB041064
US20250289799, Example 3
COc1cnc(-c2ccccc2C(C)C)nc1N(C)Cc1ccc(-c2nc(C(F)(F)F)cn2C)cc1
C27H28F3N5O
495.549000
SKDIECILFGQBFG-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771862; PubChem:CID176244191
Local ready
Direct docking supported
E3L041065
BDB041065
US20250289799, Example 4
COc1cnc(-c2ccccc2C(C)C)nc1NCc1ccc(-c2nc(C(F)(F)F)cn2C)cc1
C26H26F3N5O
481.522000
GLOWFABFNYFRQG-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771863; PubChem:CID176244283
Local ready
Direct docking supported
E3L041066
BDB041066
US20250289799, Example 5
COc1cnc(-c2ccccc2C(C)C)nc1NCC1CCN(c2ccccn2)CC1
C25H31N5O
417.557000
XMGCDPDLTQXCIO-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771864; PubChem:CID176244187
Local ready
Direct docking supported
E3L041067
BDB041067
US20250289799, Example 6
COc1cnc(-c2ccccc2C(C)C)nc1NCC1CCC(c2nc(C(F)(F)F)cn2C)CC1
C26H32F3N5O
487.570000
LVWRFVMUFYTUGF-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771865; PubChem:CID176244189
Local ready
Direct docking supported
E3L041068
BDB041068
US20250289799, Example 7
COc1cnc(-c2ccccc2C(C)C)nc1NCc1ccc(-n2nc(C(F)(F)F)cc2C)cc1
C26H26F3N5O
481.522000
UKLYHSNIFXZRKQ-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771866; PubChem:CID176244192
Local ready
Direct docking supported
E3L041069
BDB041069
US20250289799, Example 8
COc1cnc(-c2c(OC)ncnc2C2CC2)nc1N(C)Cc1ccc(-c2nc(C(F)(F)F)cn2C)cc1
C26H26F3N7O2
525.535000
VSUQONJLTNCYJL-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771867; PubChem:CID176244154
Local ready
Direct docking supported
E3L041070
BDB041070
US20250289799, Example 9
COc1ncnc(C2CC2)c1-c1ncc2c(n1)N(Cc1ccc(-c3ccccn3)cc1)CCO2
C26H24N6O2
452.518000
LWNDRGQKPNOERY-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771868; PubChem:CID176244101
Local ready
Direct docking supported
E3L041071
BDB041071
US20250289799, Example 10
COc1ncnc(C2CC2)c1-c1ncc2c(n1)N(CC1CCN(c3ccccn3)CC1)CCO2
C25H29N7O2
459.554000
JBMKXFNCMUTDDG-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771869; PubChem:CID176244319
Local ready
Direct docking supported
E3L041072
BDB041072
US20250289799, Example 11
COc1cnc(-c2ccccc2C(C)C)nc1NCc1ccc(-c2nccn3ccnc23)cc1
C27H26N6O
450.546000
WNKQUKOROKGJOK-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771870; PubChem:CID176244209
Local ready
Direct docking supported
E3L041073
BDB041073
US20250289799, Example 13
CC(C)c1ccccc1-c1ncc2c(n1)N(CC1CCC(c3nc(C(F)(F)F)cn3C)CC1)CCO2
C27H32F3N5O
499.581000
AYOSOSQIBCXLPZ-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771871; PubChem:CID176244136
Local ready
Direct docking supported
E3L041074
BDB041074
US20250289799, Example 13
CC(C)c1ccccc1-c1ncc2c(n1)N(CC1CCC(c3nc(C(F)(F)F)cn3C)CC1)CCO2
C27H32F3N5O
499.581000
AYOSOSQIBCXLPZ-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771872; PubChem:CID176244136
Local ready
Direct docking supported
E3L041075
BDB041075
US20250289799, Example 15
Cc1cc(C(F)(F)F)nn1-c1ccc(CN2C(=O)COc3cnc(-c4ccccc4C(C)C)nc32)cc1
C27H24F3N5O2
507.516000
NOJWELLSTVXUFF-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771873; PubChem:CID176244251
Local ready
Direct docking supported
E3L041076
BDB041076
US20250289799, Example 16
CC(C)c1ccccc1-c1ncc(C(F)(F)F)c(NCc2ccc(-c3cccnc3)cc2)n1
C26H23F3N4
448.492000
IRWGRMREFMEWLK-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771874; PubChem:CID177269196
Local ready
Direct docking supported
E3L041077
BDB041077
US20250289799, Example 17
CC(C)c1ccccc1-c1ncc(C(F)(F)F)c(NCc2ccc(-c3nc(C(F)(F)F)cn3C)cc2)n1
C26H23F6N5
519.493000
WRMUGCOMIALDSU-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771875; PubChem:CID176244227
Local ready
Direct docking supported
E3L041078
BDB041078
US20250289799, Example 19
COc1cnc(-c2c(OC)ncnc2C2CC2)nc1N(C)Cc1ccc(-c2ccccn2)cc1
C26H26N6O2
454.534000
WGDBKIUOGJGZRP-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771877; PubChem:CID176244160
Local ready
Direct docking supported
E3L041079
BDB041079
US20250289799, Example 22
COc1ncnc(C2CC2)c1-c1ncc2c(n1)N(CC1CCC(c3nc(C(F)(F)F)cn3C)CC1)CCO2
C26H30F3N7O2
529.567000
NKQKNWWVWWDWHX-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771880; PubChem:CID176244158
Local ready
Direct docking supported
E3L041080
BDB041080
US20250289799, Example 23
COc1cnc(-c2ccccc2C(C)C)nc1NCC12CCC(c3ccc(C(F)(F)F)cn3)(CC1)CC2
C29H33F3N4O
510.604000
DUCBLOUCIFJDGK-UHFFFAOYSA-N Q8TAF3 Ubiquitin carboxyl-terminal hydrolase 1
BindingDB, PubChem
BindingDB:BDBM771881; PubChem:CID176244216
Local ready
Direct docking supported